HCI->MIP->Publications

Publications

2012

Structured Learning from Partial Annotations
X. Lou, F. A. Hamprecht
ICML 2012. Proceedings, in press, (2012)
Overcoming species boundaries in peptide identification with BICEPS
B. Renard, B. Xu, M. Kirchner, F. Zickmann, D. Winter, S. Korten, N. Brattig, A. Tzur, F. A. Hamprecht, H. Steen
Molecular and Cellular Proteomics, in print, (2012)
Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data
J. Funke, B. Andres, F. A. Hamprecht, A. Cardona, M. Cook
CVPR 2012. Proceedings, in press, (2012)
One plus one makes three (for social networks)
E.-Á. Horvát, M. Hanselmann, F.A. Hamprecht, K.A. Zweig
PLoS ONE, in press, (2012)
[doi:10.1371/journal.pone.0034740]
Seeded watershed cut uncertainty estimators for guided interactive segmentation
C. Straehle, U. Köthe, K. Briggman, W. Denk, F.A. Hamprecht
in: CVPR 2012. Proceedings, in press, (2012)
Learning to Segment Dense Cell Nuclei with Shape Prior
X. Lou, F. A. Hamprecht
CVPR 2012. Proceedings, in press, (2012)
Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer
C.M. Zechmann, B.H. Menze, B.M. Kelm, P. Zamecnik, U. Ikinger, R. Waldherr, S. Delorme, F.A. Hamprecht, P. Bachert
Academic Radiology, in press, (2012)
3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries
B. Andres, U. Köthe, T. Kröger, M. Helmstaedter, K.L. Briggman, W. Denk, F. A. Hamprecht
Medical Image Analysis, (2012) 16 (2012), 796-805
[10.1016/j.media.2011.11.004 | Technical Report]

2011

Image Processing for Super-Resolution Localization Microscopy Utilizing an FPGA Accelerator
J. Schleicher , University of Heidelberg
Master Thesis
[Technical Report]
Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model
B. Andres , University of Heidelberg
PhD Thesis
[Technical Report]
Image-Based Supervision of a Periodically Working Machine
M. Frank, F. A. Hamprecht
Pattern Analysis and Applications, (2011), 1-10
[10.1007/s10044-011-0245-7 | Technical Report]
Structured Learning for Cell Tracking
X. Lou, F. A. Hamprecht
in: NIPS 2011. Proceedings, in press, (2011)
[Technical Report]
Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images
A. Kreshuk, C. N. Straehle, C. Sommer, U. Köthe, M. Cantoni, G. Knott, F. A. Hamprecht
PLoS ONE, (2011) 6 (10)
[10.1371/journal.pone.0024899]
Globally Optimal Image Partitioning by Multicuts
J. H. Kappes, M. Speth, B. Andres, G. Reinelt, C. Schnörr
in: EMMCVPR, Springer(2011), 31-44
[10.1007/978-3-642-23094-3_3 | Technical Report]
A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface
S. Wanner, C. Sommer, R. Rocholz, F. A. Hamprecht, B. Jähne
in: 16th International Workshop on Vision, Modelling and Visualization, Eurographics Association, Germany(2011), 199-206
[Technical Report]
Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy
M. Pfannmöller, H. Flügge, G. Benner, I. Wacker, C. Sommer, M. Hanselmann, S. Schmale, H. Schmidt, F. A. Hamprecht, T. Rabe, W. Kowalsky, R. Schröder
Nano Letters, (2011) 11, 3099-3107
[10.1021/nl201078t]
Biomedical Data Analysis with Prior Knowledge: Modeling and Learning
X. Lou , University of Heidelberg
PhD Thesis
Probabilistic Image Segmentation with Closedness Constraints
B. Andres, J. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
in: ICCV, Proceedings, (2011), 2611 - 2618
[10.1109/ICCV.2011.6126550 | Technical Report]
Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images
C. N. Straehle, U. Köthe, G. Knott, F. A. Hamprecht
in: MICCAI 2011, Proceedings., Springer(2011) 6891, 653-660
[10.1007/978-3-642-23623-5_82 | Technical Report]
Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics
F. Kaster , University of Heidelberg
PhD Thesis
On oblique random forests
B. Menze, B. H. Kelm, N. Splitthoff, U. Köthe, F. A. Hamprecht
in: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings., Springer(2011), 453-469
[10.1007/978-3-642-23783-6_29 | Technical Report]
Gaussian process classification: singly versus doubly stochastic models, and new computational schemes
J. Röder, R. Tolosana-Delgado, F. A. Hamprecht
Stochastic Environmental Research & Risk Assessment, (2011) 25 (7), 865-879
[10.1007/s00477-011-0498-0 | Technical Report]
A Machine Learning Approach to Improve Digital Embryo Analysis
M. Lindner , University of Heidelberg
Master Thesis
[Technical Report]
Interactive Segmentation of Neural Electron Microscopy Data
C. Straehle , University of Heidelberg
Master Thesis
SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists
M. Hanselmann, B. Voss, B. Y. Renard, M. Lindner, U. Köthe, M. Kirchner, F. A. Hamprecht
Bioinformatics, (2011) 27 (7), 987-993
[10.1093/bioinformatics/btr051 | Technical Report]
Automated Segmentation of Synapses in 3D EM Data
A. Kreshuk, C. Strähle, C. Sommer, U. Köthe, G. Knott, F. A. Hamprecht
in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 220-223
[10.1109/ISBI.2011.5872392 | Technical Report]
DELTR: Digital Embryo Lineage Tree Reconstructor
X. Lou, F. Kaster, M. Lindner, B. Kausler, U. Köthe, B. Höckendorf, J. Wittbrodt, H. Jänicke, F. A. Hamprecht
in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 1557-1560
[10.1109/ISBI.2011.5872698 | Technical Report]
ilastik: Interactive Learning and Segmentation Toolkit
C. Sommer, C. Strähle, U. Köthe, F. A. Hamprecht
in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 230-233
[10.1109/ISBI.2011.5872394 | Technical Report]
An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements
F. O. Kaster, B. Merkel, O. Nix, F. A. Hamprecht
Computer Science - Research and Development, (2011) 26, 65-85
[10.1007/s00450-010-0143-z | Technical Report]
Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations
F. Kaster, B. H. Menze, M.-A. Weber, F. A. Hamprecht
in: MICCAI 2010 Workshop MCV, Springer, Heidelberg(2011) LNCS 6533, 74-85
[10.1007/978-3-642-18421-5_8 | Technical Report]
Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images
B. M. Kelm, F. Kaster, A. Henning, M.-A. Weber, P. Bachert, P. Bösinger, F. A. Hamprecht, B. H. Menze
NMR in Biomedicine, (2011) 25(1), 1-13
[10.1002/nbm.1704 | Technical Report]

2010

Robust Methods for the Proteomic Data Analysis Pipeline
B. Renard , University of Heidelberg
PhD Thesis
Exploratory and computational analysis of huge volume images for connectomics
T. Kröger , University of Heidelberg
Master Thesis
[Technical Report]
Multimodal Medical Image Analysis: from Visualization to Disease Modeling
B. H. Menze, F. A. Hamprecht
Zeitschrift für Med. Physik, (2010) 1, 1-2
[10.1016/j.zemedi.2010.12.002]
Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x
B. Andres, U. Köthe, T. Kröger, F. A. Hamprecht
ArXiv e-prints, (2010)
[URL | Technical Report]
How to Extract the Geometry and Topology from Very Large 3D Segmentations
B. Andres, U. Köthe, T. Kröger, F. A. Hamprecht
ArXiv e-prints, (2010)
[URL | Technical Report]
Computational Methods for the Analysis of Mass Spectrometry Images
M. Hanselmann , University of Heidelberg
PhD Thesis
[Technical Report]
The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search
B. Andres, J. H. Kappes, U. Köthe, F. A. Hamprecht
ArXiv e-prints, (2010)
[URL | Technical Report]
Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon
A. Kreshuk, M. Stankiewicz, X. Lou, M. Kirchner, F. A. Hamprecht, M. P. Mayer
International Journal of Mass Spectrometry, (2010) 302, 125-131
[10.1016/j.ijms.2010.08.025 | Technical Report]
Geometric Analysis of 3D Electron Microscopy Data
U. Köthe, B. Andres, T. Kröger, F. A. Hamprecht
in: Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM), (2010), 22-26
[Technical Report]
An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM
B. Andres, J. H. Kappes, U. Köthe, C. Schnörr, F. A. Hamprecht
in: Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, (2010), 353-362
[10.1007/978-3-642-15986-2_36 | Technical Report]
Interactive Learning for the Analysis of Biomedical and Industrial Imagery
C. Sommer , University of Heidelberg
PhD Thesis
[Technical Report]
Learning of Optimal Illumination for Material Classification
M. Jehle, C. Sommer, B. Jähne
in: Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, Springer(2010), 563-572
[10.1007/978-3-642-15986-2_57 | Technical Report]
Automated Quality Control in the Life Sciences
C. Scheelen , University of Heidelberg
Master Thesis
Estimating the Confidence of Peptide Identifications without Decoy Databases
B. Y. Renard, W. Timm, M. Kirchner, J. A. J. Steen, F. A. Hamprecht, H. Steen
Analytical Chemistry, (2010), 4314-4318
[10.1021/ac902892j | Technical Report]
Active and Online Learning for Interactive Image Analysis
N. Hüsken , University of Heidelberg
Master Thesis
Modeling of Spectral Peaks for Mass-Spectrometry-based Proteomics
B. Kausler , Universities of Karlsruhe and Heidelberg
Master Thesis
[Technical Report]
MGFp: An Open Mascot Generic Format Parser Library Implementation
M. Kirchner, J. Steen, F. A. Hamprecht, H. Steen
Journal of Proteome Research, (2010) 9 (5), 2762–2763
[10.1021/pr100118f]
Using Protein Identification Data to Improve Mass Spectrometry Feature Extraction
M. Riedl , University of Heidelberg
Master Thesis
Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments
X. Lou, M. Kirchner, B. Y. Renard, U. Köthe, C. Graf, C. Lee, J. A. J. Steen, H. Steen, M. P. Mayer, F. A. Hamprecht
Bioinformatics, (2010) 26(12), 1535-1541
[10.1093/bioinformatics/btq165 | Technical Report]
Construction and analysis of random tree ensembles
R. Nair , University of Heidelberg
Master Thesis
An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements
F. O. Kaster, S. Kassemeyer, B. Merkel, O. Nix, F. A. Hamprecht
in: Bildverarbeitung für die Medizin 2010 - Algorithmen, Systeme, Anwendungen, Springer(2010), 97-101
[Technical Report]
From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication
K. Börner, J. Hermle, C. Sommer, N. P. Brown, B. Knapp, B. Glass, G. Torralba, J. Reymann, N. Beil, J. Beneke, R. Pepperkok, R. Schneider, T. Ludwig, M. Hausmann, F. A. Hamprecht, H. Erfle, L. Kaderali, H.-G. Kräusslich, M. J. Lehmann
Biotechnology Journal, (2010) 5, 39-49
[10.1002/biot.200900226 | Technical Report]
Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments
M. Kirchner, B. Y. Renard, U. Köthe, D. J. Pappin, F. A. Hamprecht, J. A. J. Steen, H. Steen
Bioinformatics, (2010) 26 (1), 77-83
[10.1093/bioinformatics/btp607 | Technical Report]

2009

Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times
B. Andres, U. Köthe, A. Bonea, B. Nadler, F. A. Hamprecht
in: Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, Springer(2009) 5748, 502-511
[10.1007/978-3-642-03798-6 | Technical Report]
Pixel Approximation Errors in Common Watershed Algorithms
H. Meine, U. Köthe, P. Stelldinger
in: Discrete Geometry for Computer Imagery, Springer(2009) 5810, 193-202
[10.1007/978-3-642-04397-0 | Technical Report]
Fast and Accurate 3D Edge Detection for Surface Reconstruction
C. Bähnisch, P. Stelldinger, U. Köthe
in: Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, Springer(2009) 5748, 111-120
[10.1007/978-3-642-03798-6 | Technical Report]
Classification of Spectroscopic Images in the DIROlab Environment
F.O. Kaster, B.M. Kelm, C.M. Zechmann, M.A. Weber, F.A. Hamprecht, O. Nix
in: World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, Springer(2009) 25/V, 252--255
[10.1007/978-3-642-03904-1_70]
A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy
C. Thieke, O. Nix, A. Koehn, R. Floca, D. van Straaten, H. Hahn, L. G. Strauss, U. Siems, M. Graf, H. Pruem, J. Klein, H. Laue, F. Kaster, F. A. Hamprecht, D. Simon, B. Stieltjes, J. Debus, P. E. Huber
Strahlentherapie und Onkologie, (2009) 185, 81
Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition
N. Ozlu, F. Monigatti, B. Y. Renard, C. M. Field, H. Steen, T. J. Mitchison, J. J. Steen
Molecular & Cellular Proteomics, (2009)
[10.1074/mcp.M900308-MCP200]
When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing
B. Y. Renard, M. Kirchner, F. Monigatti, A. R. Ivanov, J. Rappsilber, D. Winter, J. A. Steen, F. A. Hamprecht, H. Steen
Proteomics, (2009) 9, 4978-4984
[10.1002/pmic.200900326 | Technical Report]
A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data
B. H. Menze, B. M. Kelm, R. Masuch, U. Himmelreich, P. Bachert, W. Petrich, F. A. Hamprecht
BMC Bioinformatics, (2009) 10:213
[10.1186/1471-2105-10-213 | Technical Report]
Multivariate Watershed Segmentation of Compositional Data
M. Hanselmann, U. Köthe, B. Y. Renard, M. Kirchner, R. M. A. Heeren, F. A. Hamprecht
in: Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, Springer(2009) 5810, 180-192
[10.1007/978-3-642-04397-0 | Technical Report]
Towards Digital Staining using Imaging Mass Spectrometry and Random Forests
M. Hanselmann, U. Köthe, M. Kirchner, B. Y. Renard, E. R. Amstalden, K. Glunde, R. M. A. Heeren, F. A. Hamprecht
Journal of Proteome Research, (2009) 8, 3558-3567
[10.1021/pr900253y | Technical Report]
Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures
M. Frank, M. Plaue, F. A. Hamprecht
Optical Engineering, (2009) 48, 077003
[10.1117/1.3159869 | Technical Report]
Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process
M. Jäger, A. Kiel, D.-P. Herten, F. A. Hamprecht
ChemPhysChem, (2009) 10:14, 2486-2495
[10.1002/cphc.200900331]
Analysing spatio-temporal patterns of the global NO₂-distribution retrieved frome GOME satellite observations using a generalized additive model
M. Hayn, S. Beirle, F. A. Hamprecht, U. Platt, B. H. Menze, T. Wagner
Atmospheric Chemistry and Physics, (2009) 9, 9367-9398
[10.5194/acp-9-6459-2009 | Technical Report]
Processing Spectral Data
L. Görlitz, B. H. Menze, B. M. Kelm, F. A. Hamprecht
Surface and Interface Analysis, (2009) 41, 636-644
[10.1002/sia.3066 | Technical Report]
Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge
B. M. Kelm, B. H. Menze, O. Nix, C. Zechmann, F. A. Hamprecht
IEEE Transaction on Medical Imaging, (2009) 28:10, 1534-1547
[10.1109/TMI.2009.2019957 | Technical Report]
Quantification of Tumour Angiogenesis Using Pattern Recognition
S. Kassemeyer , University of Heidelberg
Master Thesis
Semi-automatic analysis of high-information-content neurobiological image data
J. Greis , University of Heidelberg
Master Thesis
Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation
S. Trittler, F. A. Hamprecht
Digital Signal Processing, (2009) 19, 628-639
[10.1016/j.dsp.2008.10.003 | Technical Report]
Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras
M. Frank, M. Plaue, H. Rapp, U. Köthe, B. Jähne, F. A. Hamprecht
Optical Engineering, (2009) 48, 013602
[10.1117/1.3070634 | Technical Report]
Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen
M. Staudacher, F. A. Hamprecht, L. Görlitz
Patent, Patent Number: WO2009/062781 A1

2008

A Topological Sampling Theorem for Robust Boundary Reconstruction and Image Segmentation
H. Meine, U. Köthe, P. Stelldinger
Discrete Applied Mathematics, (2008) 157, 524-541
[10.1016/j.dam.2008.05.031]
What Can We Learn from Discrete Images about the Continuous World
U. Köthe
in: Discrete Geometry for Computer Imagery, Springer(2008) 4992, 4-19
[10.1007/978-3-540-79126-3_2]
Method for processing an intensity image of a microscope
M. Staudacher, F. A. Hamprecht, L. Görlitz
Patent, Patent Number: WO2008/034721-A1;
Alignment and Retention Time Correction of LC-MS Data in Proteomics
B. Voss , University of Heidelberg
Master Thesis
Oject Detection with Generic Features: An Application to STED Microscopy
M. Griessinger , University of Heidelberg
Master Thesis
Pattern Recognition on Statistically Textured Surfaces
P. Sauer , University of Heidelberg
Master Thesis
Concise Representation of MS Images by Probabilistic Latent Semantic Analysis
M. Hanselmann, M. Kirchner, B. Y. Renard, E. R. Amstalden, K. Glunde, R. M. A. Heeren, F. A. Hamprecht
Analytical Chemistry, (2008) 80, 9649-9658
[10.1021/ac801303x | Technical Report]
A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras
H. Rapp, M. Frank, F. A. Hamprecht, B. Jähne
Int. J. Intelligent Systems Technologies and Applications, (2008) 5, 402-413
[10.1504/IJISTA.2008.021303 | Technical Report]
Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes
M. Jäger, F. A. Hamprecht
IEEE Transactions on Industrial Electronics, (2008) 56:4, 1307-1313
[10.1109/TIE.2008.2008339]
NITPICK: Peak Identification for Mass Spectrometry Data
B. Y. Renard, M. Kirchner, H. Steen, J. A J. Steen, F. A. Hamprecht
BMC Bioinformatics, (2008) 9, 355
[10.1186/1471-2105-9-355]
Peak Identification for Liquid Chromatography and Mass Spectrometry
S. Boppel , University of Heidelberg
Master Thesis
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics
T. König, B. H. Menze, M. Kirchner, F. Monigatti, K. C. Parker, T. Patterson, J. Jebanthirajah Steen, F. A. Hamprecht, H. Steen
Journal of Proteome Research, (2008) 7, 3708-3717
[10.1021/pr700859x | Technical Report]
On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation
B. Andres, C. Kondermann, D. Kondermann, U. Köthe, F. A. Hamprecht, C. S. Garbe
Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on, (2008), 1-6
[10.1109/CVPR.2008.4587571 | Technical Report]
Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification
B. Andres, U. Köthe, M. Helmstaedter, W. Denk, F. A. Hamprecht
in: Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings, Springer(2008) 5096, 142-152
[10.1007/978-3-540-69321-5_15 | Technical Report]
Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis
J. Steen, H. Steen, A. Georgi, K. Parker, M. Springer, M. Kirchner, F. A. Hamprecht, M. W. Kirschner
Proceedings of the National Academy of Sciences, (2008) 105, 6069-6074
[10.1073/pnas.0709807104 | Technical Report]
Sputter Tracking for the Automatic Monitoring of Industrial Laser Welding Processes
M. Jäger, S. Humbert, F. A. Hamprecht
IEEE Transactions on Industrial Electronics, (2008) 55, 2177-2184
[10.1109/TIE.2008.918637]
Weakly Supervised Learning of a Classifier for Unusual Event Detection
M. Jäger, C. Knoll, F. A. Hamprecht
IEEE Transactions on Image Processing, (2008) 17, 1700-1708
[10.1109/TIP.2008.2001043 | Technical Report]
Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI
B. H. Menze, B. M. Kelm, M. Weber, P. Bachert, F. A. Hamprecht
Magnetic Resonance in Medicine, (2008) 59, 1457-1466
[10.1002/mrm.21519 | Technical Report]
Nonlinear Analysis of Multi-Dimensional Signals
C. S. Garbe, K. Krajsek, P. Pavlov, B. Andres, M. Mühlich, I. Stuke, C. Mota, M. Böhme, M. Haker, T. Schuchert, H. Scharr, T. Aach, E. Barth, R. Mester, B. Jähne
in: Mathematical Methods in Signal Processing and Digital Image Analysis, Springer(2008), 231-288
[10.1007/978-3-540-75632-3_7 | Technical Report]
Analysis of Spectral Data
M. Kirchner , University of Heidelberg
PhD Thesis

2007

Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer
C. Weber, C. M. Zechmann, B. M. Kelm, R. Zamecnik, D. Hendricks, R. Waldherr, F. A. Hamprecht, S. Delorme, P. Bachert, U. Ikinger
Der Urologe, (2007) 46, 1252
[10.1007/s00120-007-1488-1]
Pattern Recognition, 29th DAGM Symposium, Heidelberg, Germany, September 12-14, 2007, Proceedings
[10.1007/978-3-540-74936-3]
Schnelle 3D-Vermessung von Partikeln in Rasterelektronenmiskroskopen mit Hilfe eines Rücksteuerdetektors
L. Görlitz, M. Singh, P. Schützbach
Invention Disclosure
Pattern Recognition in the Quantitative Analysis of Vector-Valued Image Data: Diagnostic Systems and Applications
B. Menze , University of Heidelberg
PhD Thesis
Modern Concepts for Semi-Supervised Learning and Multidimensional Image Processing
L. Görlitz , University of Heidelberg
PhD Thesis
Selection of Local Optical Flow Models by Means of Residual Analysis
B. Andres, F. A. Hamprecht, C. S. Garbe
in: Pattern Recognition, Springer(2007) 4713, 72-81
[10.1007/978-3-540-74936-3_8 | Technical Report]
Semi-Supervised Tumor Detection in MRSI With Discriminative Random Fields
L. Görlitz, B. H. Menze, M.-A. Weber, B. M. Kelm, F. A. Hamprecht
in: Pattern Recognition, Springer(2007) 4713, 224-233
[10.1007/978-3-540-74936-3_23 | Technical Report]
Investigation of a 3D Camera
M. Frank , University of Heidelberg
Master Thesis
Processing of Interferometric Data
S. Trittler , University of Heidelberg
PhD Thesis
Retention Time Domain Registration of Liquid Chromatography/Mass Spectrometry Data
B. Saussen , University of Heidelberg
Master Thesis
Quality Control in Mass Spectrometry
T. König , University of Heidelberg
Master Thesis
[Technical Report]
Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East
B. H. Menze, J. A. Ur
in: Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland, International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences(2007)
[Technical Report]
An Improved Method for Peak Identification in Proteomic Mass Spectrometry Data
B. Y. Renard , University of Heidelberg
Master Thesis
Statistical analysis of spatio-temporal patterns in global NOX satellite data
M. Hayn , University of Heidelberg
Master Thesis
Evaluation of Vector-Valued Clinical Image Data Using Probabilistic Graphical Models: Quantification and Pattern Recognition
B. M. Kelm , University of Heidelberg
PhD Thesis
Time Series Analysis and Classification with State-Space Models for Industrial Processes and the Life Sciences
M. Jäger , University of Heidelberg
PhD Thesis
[Technical Report]
Model Selection in Optical Flow-Based Motion Estimation by Means of Residual Analysis
B. Andres , University of Heidelberg
Master Thesis
[Technical Report]
Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification
B. M. Kelm, B. H. Menze, C. M. Zechmann, K. T. Baudendistel, F. A. Hamprecht
Magnetic Resonance in Medicine, (2007) 57, 150-159
[10.1002/mrm.21112 | Technical Report]
Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy
B. H. Menze, W. Petrich, F. A. Hamprecht
Analytical and Bioanalytical Chemistry, (2007) 387, 1801-1807
[10.1007/s00216-006-1070-5 | Technical Report]
amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R
M. Kirchner, B. Saussen, H. Steen, J. A. J. Steen, F. A. Hamprecht
Journal of Statistical Software, (2007) 18, 1-12
[URL]
Virtual Survey on North Mesopotamian Tell Sites by Means of Satellite Remote Sensing
B. H. Menze, S. Muehl, A. G. Sherratt
in: Broadening Horizons: Multidisciplinary Approaches to Landscape Study, Cambridge Scholars Publishing(2007), 5-29
[Technical Report]
From eigenspots to fisherspots - latent spaces in the nonlinear detection of spot patterns in a highly variable background
B. H. Menze, B. M. Kelm, F. A. Hamprecht
in: Advances in data analysis, Springer(2007) 33, 255-262
[10.1007/978-3-540-70981-7_29 | Technical Report]
Generalizing the Abbott-Firestone curve by two new surface descriptors
J. Schmähling, F. A. Hamprecht
Wear, (2007) 262, 1360-1371
[10.1016/j.wear.2007.01.025 | Technical Report]

2006

Statistical characterization of technical surface microstructure
J. Schmähling , University of Heidelberg
PhD Thesis
[Technical Report]
Zuordnung von Partikeln zu Entstehungsprozessen
L. Görlitz, F. A. Hamprecht, M. Staudacher
Invention Disclosure
Data Mining auf multidimensionalen und komplexen Daten in der industriellen Bildverarbeitung
S. Hader , University of Heidelberg
PhD Thesis
Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images
B. H. Menze, B. M. Kelm, D. Heck, M. P. Lichy, F. A. Hamprecht
in: Bildverarbeitung für die Medizin, (2006), 31-36
[10.1007/3-540-32137-3_7]
Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients
C. Zechmann, B. M. Kelm, P. Zamecnik, U. Ikinger, R. Waldherr, S. Röll, S. Delorme, F. A. Hamprecht, P. Bachert
in: Proceedings of the 16th ISMRM, (2006)
Discontinuity Preserving Filtering of Spectral Images
K. Lerch , University of Heidelberg
Master Thesis
Single tone frequency estimation from very few sampling points
M. Wieler , University of Heidelberg
Master Thesis
Color image processing
M. F. Carlsohn, B. H. Menze, B. M. Kelm, F. A. Hamprecht, A. Kercek, R. Leitner, G. Polder
CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.
B. M. Kelm, B. H. Menze, T. Neff, C. M. Zechmann, F. A. Hamprecht
in: Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, Springer(2006), 51-55
[10.1007/3-540-32137-3_7 | URL | Technical Report]
Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM
B. M. Kelm, N. Müller, B. H. Menze, F. A. Hamprecht
in: Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis), IEEE Computer Society(2006), 96-103
[10.1109/CVPRW.2006.41 | Technical Report]
Combining Generative and Discriminative Methods for Pixel Classification with Multi-Conditional Learning.
B. M. Kelm, C. Pal, A. McCallum
in: ICPR 2006, (2006) 2, 828-832
[10.1109/ICPR.2006.384 | Technical Report]
Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren
M. P. Lichy, P. Bachert, F. A. Hamprecht, M.-A. Weber, J. Debus, D. Schulz-Ertner, H.-U. Kauczor, H.-P. Schlemmer
Zeitung für Röntgenforschung, (2006) 178, 627-633
[10.1055/s-2006-926744]
Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor
B. H. Menze, M. P. Lichy, P. Bachert, B. M. Kelm, H. P. Schlemmer, F. A. Hamprecht
NMR in Biomedicine, (2006) 19, 599-609
[10.1002/nbm.1041 | Technical Report]
Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model
B. H. Menze, J. A. Ur, A. G. Sherratt
Photgrammetric Engineering & Remote Sensing, (2006) 3, 321-327
[Technical Report]
A three-dimensional measure of surface roughness based on mathematical morphology
J. Schmähling, F. A. Hamprecht, D. M. P. Hoffmann
International Journal of Machine Tools and Manufacture, (2006) 46 (14), 1764-1769
[10.1016/j.ijmachtools.2005.12.003 | Technical Report]
A QCAR-approach to materials modelling
S. Sieg, B. Stutz, T. Schmidt, F. A. Hamprecht, W. F. Maier
Journal of Molecular Modeling, (2006) 12, 611-619
[10.1007/s00894-005-0068-9 | Technical Report]

2005

Verfahren und Prüfkörper zur Bestimmung der Reinigungswirkung in einem Ultraschallbild
L. Strobel J. Görlitz, M. Staudacher
Invention Disclosure
On the Application of Multiscale Motion Estimation in Intravascular Elastography
T. König, F. A. Hamprecht, H. Kücherer
University of Heidelberg
Report about VOCs Dataset's Analysis based on Random Forests
H. Zhang, F. A. Hamprecht, A. Amann
in: Proceedings of the HPC-Asia05, IEEE Computer Society Press(2005), 603-607
Partikel-Verfolgung beim Laserschweißen mit dem Kalman-Filter
S. Humbert , University of Heidelberg
Master Thesis
Detektion von Partikeln in Intensitätsbildern mit Hilfe eines morphologischen Skalenraumes
L. Görlitz, F. A. Hamprecht, M. Staudacher
Invention Disclosure
Bayesian Estimation for White Light Interferometry
M. Hissmann , University of Heidelberg
PhD Thesis
[URL]
Bayesian surface estimation for white light interferometry
M. Hissmann, F. A. Hamprecht
Optical Engineering, (2005) 44, 1-9
[10.1117/1.829651 | Technical Report]
Automatisierte Klassifikation von Laserschweißprozessen durch Nutzung von 3D Signalverarbeitungs-Algorithmen
M. Jäger, C. Knoll, F. A. Hamprecht
Invention Disclosure
Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen
B. M. Kelm, B. H. Menze, F. A. Hamprecht
in: GMA-Kongress 2005, Automation als interdisziplinäre Herausforderung, (2005) 1883, 457-466
[Technical Report]
Optimal lattices for sampling
H. R. Künsch, E. Agrell, F. A. Hamprecht
IEEE Transactions on Information Theory, (2005) 51, 634-647
[10.1109/TIT.2004.840864]
Tell Spotting - Surveying Near Eastern Settlement Mounds from Space
B. H. Menze, J. A. Ur, A. G. Sherratt
in: Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy, (2005), 217-223
[Technical Report]

2004

Classification of in vivo magnetic resonance spectra
B. H. Menze, M. Wormit, P. Bachert, M. Lichy, H.-P. Schlemmer, F. A. Hamprecht
in: Classification in ubiquitous challenge: Proceedings of the GfKl 2004, Springer(2004), 362-369
Statistische Karten in der Magnetresonanzspektroskopie
L. Feistner , University of Heidelberg
Master Thesis
Proximity Graphs for Nonlinear Dimension Reduction
D. Heck , University of Heidelberg
Master Thesis
Spatial extensions to self-modeling curve resolution
M. Kirchner , University of Heidelberg
Master Thesis
Vom Bild zur Information
F. A. Hamprecht, B. Jähne
Ruperto Carola - Forschungsmagazin der Universität Heidelberg, (2004) 03.2004, 9-12
[http://www.uni-heidelberg.de/presse/ruca/ruca04-03]
Two-Stage Classification with Automatic Feature Selection for an Industrial Application
S. Hader, F. A. Hamprecht
in: Classification, the ubiquitous challenge: Proceedings of GfKl 2004, Springer(2004), 137-144
Classification
F. A. Hamprecht
in: Practical Handbook on Image Processing for Scientific and Technical Applications, CRC Press(2004), 509-519
Klassifikation von Magnetresonanzspektren
B. H. Menze , University of Heidelberg
Master Thesis
Nonparametric Smoothing of Height maps using ``Confidence'' values
J. Restle, M. Hissmann, F. A. Hamprecht
Optical Engineering, (2004) 43, 866-871
[10.1117/1.1666622]

2003

System Concept for Image Sequence Classification in Laser Welding
S. Hader
in: Pattern Recognition, Springer(2003) 2781, 212-219
[10.1007/b12010]
A new approach for defect detection in X-ray CT images
H. Eisele, F. A. Hamprecht
in: Pattern Recognition, Springer(2003) 2449, 345-352
[10.1007/3-540-45783-6]
Efficient Density Clustering
S. Hader, F. A. Hamprecht
in: Between Data Science and Applied Data Analysis, Springer(2003), 39-48
[10.1007/b13634]
Exploring a space of materials: spatial sampling design and subset selection
F. A. Hamprecht, E. Agrell
in: Experimental Design for Combinatorial and High Throughput Materials Development, Wiley(2003)
[Technical Report]
Bayessche Schätzung von Höhenkarten aus der Weiß licht-Interferometrie
M. Hissmann, F. A. Hamprecht
in: Oberflächenmesstechnik 2003, (2003), 187--196
Optimierung der Weißlichtinterferometrie für Applikationen der industriellen Qualitätskontrolle
J. Restle , University of Heidelberg
PhD Thesis

2002

Für Anspruchsvolle - Multidimensionale Bildverarbeitung in der Produktion
B. Jähne, M. Brocke, H. Eisele, S. Hader, F. A. Hamprecht, W. Happold, F. Raisch, J. Restle
Qualität und Zuverlässigkeit, (2002) 47, 1154-1159
Automated defect detection and evaluation in X-ray CT images
H. Eisele , University of Heidelberg
PhD Thesis
[URL]
A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution
P. J. Gee, F. A. Hamprecht, L. D. Schuler, W. F. van Gunsteren, E. Duchardt, H. Schwalbe, M. Albert, D. Seebach
Helv. Chim. Acta, (2002) 85, 618-632
Chemical library subset selection algorithms: a unified derivation using spatial statistics
F. A. Hamprecht, W. Thiel, W. F. van Gunsteren
Journal of Chemical Information and Computer Sciences, (2002) 42, 414-428

2001

Horizontal scannendes Weißlicht-Interferometer
J. Restle
Invention Disclosure
Fibrillation power: An alternative method of ECG spectral analysis for prediction of countershock success in a porcine model of ventricular fibrillation
F. A. Hamprecht, U. Achleitner, A. C. Krismer, K. H. Lindner, V. Wenzel, H.-U. Strohmenger, W. Thiel, W. F. van Gunsteren
Resuscitation, (2001) 50, 287-296
Preliminary results on the prediction of countershock success with fibrillation power
F. A. Hamprecht, D. Jost, M. Rüttimann, F. Calamai, J. J. Kowalski
Resuscitation, (2001) 50, 297-299
A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization
F. A. Hamprecht, C. Peter, X. Daura, W. Thiel, W. F. van Gunsteren
Journal of Chemical Physics, (2001) 114, 2079-2089

1998

Theoretical Investigation of NMR Chemical Shifts and Reactivities of Oxovanadium (V) Compounds
M. Bühl, F. A. Hamprecht
Journal of Computational Chemistry, (1998) 19, 113-122
Development and assessment of new exchange-correlation functionals
F. A. Hamprecht, A. J. Cohen, D. J. Tozer, N. C. Handy
Journal of Chemical Physics, (1998) 109, 6264-6271
[10.1063/1.477267]
Threedimensional Quantitative Similarity-Activity Relationships (3DQSiAR) from SEAL Similarity Matrices
H. Kubinyi, F. A. Hamprecht, T. Mietzner
Journal of Medicinal Chemistry, (1998) 41, 2553-2564

1997

Generation of pseudo-native protein structures for threading
F. A. Hamprecht, W. R. P. Scott, W. F. van Gunsteren
Proteins, (1997) 28, 522-529

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