@article {6334, title = {ilastik: interactive machine learning for (bio)image analysis}, journal = {Nature Methods}, volume = {16}, year = {2019}, pages = {1226-1232}, doi = {10.1038/s41592-019-0582-9}, author = {Stuart Berg and Kutra, D and Kroeger, T and Christoph N. Straehle and Bernhard X. Kausler and Haubold, C. and Schiegg, M and Ales, J and Thorsten Beier and Rudy, M and Eren, K and Cervantes, JI and Xu, B and Beuttenm{\"u}ller, F and Wolny, A and Zhang, C and Ullrich K{\"o}the and Fred A. Hamprecht and Kreshuk, A} } @proceedings {6182, title = {Diverse M-best Solutions by Dynamic Programming}, volume = {LNCS 10496}, year = {2017}, pages = {255-267}, publisher = {Springer}, doi = {10.1007/978-3-319-66709-6_21}, author = {Haubold, C. and Uhlmann, V and Michael Unser and Fred A. Hamprecht} } @article {6209, title = {Diverse Shortest Paths for Bioimage Analysis}, journal = {Bioinformatics}, year = {2017}, pages = {1-3}, doi = {10.1093/bioinformatics/btx621}, author = {Uhlmann, V and Haubold, C. and Fred A. Hamprecht and Michael Unser} } @article {6210, title = {An Objective Comparison of Cell Tracking Algorithms}, journal = {Nature Methods}, volume = {14}, year = {2017}, pages = {1141-1152}, doi = {10.1038/NMETH.447}, author = {Ulman, V. and Ma{\v s}ka, M. and Magnusson, K .E. G. and Ronneberger, O. and Haubold, C. and Harder, N. and Matula, P. and Matula, P. and Svoboda, D. and Radojevic, M. and Smal, I. and Karl Rohr and Jald{\'e}n, J. and Blau, H. M. and Dzyubachyk, O. and Lelieveldt, B. and Xiao, P. and Li, Y. and Cho, S-Y. and Dufour, A. and Olivo-Marin, J. C. and Reyes-Aldasoro, C. C. and Solis-Lemus, J. A. and Bensch, R. and Brox, T. and Stegmaier, J. and Mikut, R. and Wolf, S. and Fred A. Hamprecht and Esteves, T. and Quelhas, P. and Demirel, {\"O}. and Malstr{\"o}m, L. and Jug, F. and Toman{\v c}{\'a}k, P. and Meijering, E. and Mu{\~n}oz-Barrutia, A. and Kozubek, M. and Ortiz-de-Solorzano, C.} } @phdthesis {6186, title = {Scalable Inference for Multi-Target Tracking on Proliferating Cells}, year = {2017}, publisher = {University of Heidelberg}, author = {Haubold, C.} } @proceedings {6077, title = {A Generalized Successive Shortest Paths Solver for Tracking Dividing Targets}, volume = {LNCS 9911}, year = {2016}, pages = {566-582}, publisher = {Springer}, doi = {10.1007/978-3-319-46478-7_35}, author = {Haubold, C. and Ales, J and Wolf, S and Fred A. Hamprecht} } @inbook {6055, title = {Segmenting and Tracking Multiple Dividing Targets Using ilastik}, booktitle = {Focus on Bio-Image Informatics}, series = {Advances in Anatomy, Embryology and Cell Biology}, volume = {219}, year = {2016}, pages = {199-229}, publisher = {Springer}, organization = {Springer}, doi = {10.1007/978-3-319-28549-8_8}, author = {Haubold, C. and Schiegg, M. and Kreshuk, A. and Stuart Berg and Ullrich K{\"o}the and Fred A. Hamprecht} } @article {schiegg_15_graphical, title = {Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell}, journal = {Bioinformatics}, volume = {31}, number = {6}, year = {2015}, note = {1}, pages = {948-956}, doi = {10.1093/bioinformatics/btu764}, url = {http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref\&ijkey=mTXWsiFrci7R8tc}, author = {Schiegg, M. and Hanslovsky, P. and Haubold, C. and Ullrich K{\"o}the and Hufnagel, L. and Fred A. Hamprecht} } @conference {schiegg_15_proof-reading, title = {Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models}, booktitle = {ISBI. Proceedings}, year = {2015}, note = {1}, pages = {394-398}, doi = {10.1109/ISBI.2015.7163895}, author = {Schiegg, M. and Heuer, B. and Haubold, C. and Wolf, S. and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {drory_14_semi-global, title = {Semi-Global Matching: A Principled Derivation in Terms of Message Passing}, booktitle = {GCPR. Proceedings}, number = {8753}, year = {2014}, note = {1}, pages = {43-53}, doi = {10.1007/978-3-319-11752-2_4}, author = {Drory, A. and Haubold, C. and Avidan, S. and Fred A. Hamprecht} }