@article {6334,
	title = {ilastik: interactive machine learning for (bio)image analysis},
	journal = {Nature Methods},
	volume = {16},
	year = {2019},
	pages = {1226-1232},
	doi = {10.1038/s41592-019-0582-9},
	author = {Stuart Berg and Kutra, D and Kroeger, T and Christoph N. Straehle and Bernhard X. Kausler and Haubold, C. and Schiegg, M and Ales, J and Thorsten Beier and Rudy, M and Eren, K and Cervantes, JI and Xu, B and Beuttenm{\"u}ller, F and Wolny, A and Zhang, C and Ullrich K{\"o}the and Fred A. Hamprecht and Kreshuk, A}
}
@proceedings {6182,
	title = {Diverse M-best Solutions by Dynamic Programming},
	volume = {LNCS 10496},
	year = {2017},
	pages = {255-267},
	publisher = {Springer},
	doi = {10.1007/978-3-319-66709-6_21},
	author = {Haubold, C. and Uhlmann, V and Michael Unser and Fred A. Hamprecht}
}
@article {6209,
	title = {Diverse Shortest Paths for Bioimage Analysis},
	journal = {Bioinformatics},
	year = {2017},
	pages = {1-3},
	doi = {10.1093/bioinformatics/btx621},
	author = {Uhlmann, V and Haubold, C. and Fred A. Hamprecht and Michael Unser}
}
@article {6210,
	title = {An Objective Comparison of Cell Tracking Algorithms},
	journal = {Nature Methods},
	volume = {14},
	year = {2017},
	pages = {1141-1152},
	doi = {10.1038/NMETH.447},
	author = {Ulman, V. and Ma{\v s}ka, M. and Magnusson, K .E. G. and Ronneberger, O. and Haubold, C. and Harder, N. and Matula, P. and Matula, P. and Svoboda, D. and Radojevic, M. and Smal, I. and Karl Rohr and Jald{\'e}n, J. and Blau, H. M. and Dzyubachyk, O. and Lelieveldt, B. and Xiao, P. and Li, Y. and Cho, S-Y. and Dufour, A. and Olivo-Marin, J. C. and Reyes-Aldasoro, C. C. and Solis-Lemus, J. A. and Bensch, R. and Brox, T. and Stegmaier, J. and Mikut, R. and Wolf, S. and Fred A. Hamprecht and Esteves, T. and Quelhas, P. and Demirel, {\"O}. and Malstr{\"o}m, L. and Jug, F. and Toman{\v c}{\'a}k, P. and Meijering, E. and Mu{\~n}oz-Barrutia, A. and Kozubek, M. and Ortiz-de-Solorzano, C.}
}
@phdthesis {6186,
	title = {Scalable Inference for Multi-Target Tracking on Proliferating Cells},
	year = {2017},
	publisher = {University of Heidelberg},
	author = {Haubold, C.}
}
@proceedings {6077,
	title = {A Generalized Successive Shortest Paths Solver for Tracking Dividing Targets},
	volume = {LNCS 9911},
	year = {2016},
	pages = {566-582},
	publisher = {Springer},
	doi = {10.1007/978-3-319-46478-7_35},
	author = {Haubold, C. and Ales, J and Wolf, S and Fred A. Hamprecht}
}
@inbook {6055,
	title = {Segmenting and Tracking Multiple Dividing Targets Using ilastik},
	booktitle = {Focus on Bio-Image Informatics},
	series = {Advances in Anatomy, Embryology and Cell Biology},
	volume = {219},
	year = {2016},
	pages = {199-229},
	publisher = {Springer},
	organization = {Springer},
	doi = {10.1007/978-3-319-28549-8_8},
	author = {Haubold, C. and Schiegg, M. and Kreshuk, A. and Stuart Berg and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {schiegg_15_graphical,
	title = {Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell},
	journal = {Bioinformatics},
	volume = {31},
	number = {6},
	year = {2015},
	note = {1},
	pages = {948-956},
	doi = {10.1093/bioinformatics/btu764},
	url = {http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref\&ijkey=mTXWsiFrci7R8tc},
	author = {Schiegg, M. and Hanslovsky, P. and Haubold, C. and Ullrich K{\"o}the and Hufnagel, L. and Fred A. Hamprecht}
}
@conference {schiegg_15_proof-reading,
	title = {Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models},
	booktitle = {ISBI. Proceedings},
	year = {2015},
	note = {1},
	pages = {394-398},
	doi = {10.1109/ISBI.2015.7163895},
	author = {Schiegg, M. and Heuer, B. and Haubold, C. and Wolf, S. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {drory_14_semi-global,
	title = {Semi-Global Matching: A Principled Derivation in Terms of Message Passing},
	booktitle = {GCPR. Proceedings},
	number = {8753},
	year = {2014},
	note = {1},
	pages = {43-53},
	doi = {10.1007/978-3-319-11752-2_4},
	author = {Drory, A. and Haubold, C. and Avidan, S. and Fred A. Hamprecht}
}
