@article {renard_12_overcoming, title = {Overcoming species boundaries in peptide identification with BICEPS}, journal = {Molecular and Cellular Proteomics}, volume = {11}, year = {2012}, doi = {10.1074/mcp.M111.014167}, author = {B. Y. Renard and Xu, B. and Kirchner, M. and Zickmann, F. and Winter, D. and Korten, S. and Brattig, N. and Tzur, A. and Fred A. Hamprecht and Steen, H.} } @article {kirchner_10_computational, title = {Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments}, journal = {Bioinformatics}, volume = {26 (1)}, year = {2010}, note = {1}, pages = {77-83}, doi = {10.1093/bioinformatics/btp607}, author = {Kirchner, M. and B. Y. Renard and Ullrich K{\"o}the and Pappin, D. J. and Fred A. Hamprecht and Judith A. J. Steen and Steen, H.} } @article {lou_10_deuteration, title = {Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments}, journal = {Bioinformatics}, volume = {26(12)}, year = {2010}, note = {1}, pages = {1535-1541}, doi = {10.1093/bioinformatics/btq165}, author = {Lou, X. and Kirchner, M. and B. Y. Renard and Ullrich K{\"o}the and Graf, C. and Lee, C. and Judith A. J. Steen and Steen, H. and Mayer, M. P. and Fred A. Hamprecht} } @article {renard_10_estimating, title = {Estimating the Confidence of Peptide Identifications without Decoy Databases}, journal = {Analytical Chemistry}, year = {2010}, note = {1}, pages = {4314-4318}, doi = {10.1021/ac902892j}, author = {B. Y. Renard and Timm, W. and Kirchner, M. and Judith A. J. Steen and Fred A. Hamprecht and Steen, H.} } @article {kirchner_10_mgfp, title = {MGFp: An Open Mascot Generic Format Parser Library Implementation}, journal = {Journal of Proteome Research}, volume = {9 (5)}, year = {2010}, pages = {27622763}, doi = {10.1021/pr100118f}, author = {Kirchner, M. and Judith A. J. Steen and Fred A. Hamprecht and Steen, H.} } @article {ozlu_09_binding, title = {Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition}, journal = {Molecular \& Cellular Proteomics}, year = {2009}, note = {1}, doi = {10.1074/mcp.M900308-MCP200}, author = {Ozlu, N. and Monigatti, F. and B. Y. Renard and Field, C. M. and Steen, H. and Mitchison, T. J. and Judith Jebanthirajah Steen} } @article {renard_09_when, title = {When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing}, journal = {Proteomics}, volume = {9}, year = {2009}, note = {1}, pages = {4978-4984}, doi = {10.1002/pmic.200900326}, author = {B. Y. Renard and Kirchner, M. and Monigatti, F. and Ivanov, A. R. and Rappsilber, J. and Winter, D. and Judith A. J. Steen and Fred A. Hamprecht and Steen, H.} } @article {steen_08_different, title = {Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis}, journal = {Proceedings of the National Academy of Sciences}, volume = {105}, number = {16}, year = {2008}, note = {1}, pages = {6069-6074}, doi = {10.1073/pnas.0709807104}, author = {Judith A. J. Steen and Steen, H. and Georgi, A. and Kenneth C. Parker and Springer, M. and Kirchner, M. and Fred A. Hamprecht and Kirschner, M. W.} } @article {renard_08_nitpick, title = {NITPICK: Peak Identification for Mass Spectrometry Data}, journal = {BMC Bioinformatics}, volume = {9}, year = {2008}, pages = {355}, doi = {10.1186/1471-2105-9-355}, author = {B. Y. Renard and Kirchner, M. and Steen, H. and Judith A. J. Steen and Fred A. Hamprecht} } @article {koenig_08_robust, title = {Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics}, journal = {Journal of Proteome Research}, volume = {7}, number = {9}, year = {2008}, note = {1}, pages = {3708-3717}, doi = {10.1021/pr700859x}, author = {K{\"o}nig, T. and Bjoern H. Menze and Kirchner, M. and Monigatti, F. and Kenneth C. Parker and Patterson, T. and Judith Jebanthirajah Steen and Fred A. Hamprecht and Steen, H.} } @article {kirchner_07_amsrpm, title = {amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R}, journal = {Journal of Statistical Software}, volume = {18}, number = {4}, year = {2007}, note = {1}, pages = {1-12}, url = {http://www.jstatsoft.org/v18/i04/paper}, author = {Kirchner, M. and Saussen, B. and Steen, H. and Judith A. J. Steen and Fred A. Hamprecht} }