@article {kirchner_10_computational,
	title = {Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments},
	journal = {Bioinformatics},
	volume = {26 (1)},
	year = {2010},
	note = {1},
	pages = {77-83},
	doi = {10.1093/bioinformatics/btp607},
	author = {Kirchner, M. and B. Y. Renard and Ullrich K{\"o}the and Pappin, D. J. and Fred A. Hamprecht and Judith A. J. Steen and Steen, H.}
}
@article {lou_10_deuteration,
	title = {Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments},
	journal = {Bioinformatics},
	volume = {26(12)},
	year = {2010},
	note = {1},
	pages = {1535-1541},
	doi = {10.1093/bioinformatics/btq165},
	author = {Lou, X. and Kirchner, M. and B. Y. Renard and Ullrich K{\"o}the and Graf, C. and Lee, C. and Judith A. J. Steen and Steen, H. and Mayer, M. P. and Fred A. Hamprecht}
}
@article {renard_10_estimating,
	title = {Estimating the Confidence of Peptide Identifications without Decoy Databases},
	journal = {Analytical Chemistry},
	year = {2010},
	note = {1},
	pages = {4314-4318},
	doi = {10.1021/ac902892j},
	author = {B. Y. Renard and Timm, W. and Kirchner, M. and Judith A. J. Steen and Fred A. Hamprecht and Steen, H.}
}
@article {kirchner_10_mgfp,
	title = {MGFp: An Open Mascot Generic Format Parser Library Implementation},
	journal = {Journal of Proteome Research},
	volume = {9 (5)},
	year = {2010},
	pages = {27622763},
	doi = {10.1021/pr100118f},
	author = {Kirchner, M. and Judith A. J. Steen and Fred A. Hamprecht and Steen, H.}
}
@article {renard_09_when,
	title = {When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing},
	journal = {Proteomics},
	volume = {9},
	year = {2009},
	note = {1},
	pages = {4978-4984},
	doi = {10.1002/pmic.200900326},
	author = {B. Y. Renard and Kirchner, M. and Monigatti, F. and Ivanov, A. R. and Rappsilber, J. and Winter, D. and Judith A. J. Steen and Fred A. Hamprecht and Steen, H.}
}
@article {steen_08_different,
	title = {Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis},
	journal = {Proceedings of the National Academy of Sciences},
	volume = {105},
	number = {16},
	year = {2008},
	note = {1},
	pages = {6069-6074},
	doi = {10.1073/pnas.0709807104},
	author = {Judith A. J. Steen and Steen, H. and Georgi, A. and Kenneth C. Parker and Springer, M. and Kirchner, M. and Fred A. Hamprecht and Kirschner, M. W.}
}
@article {renard_08_nitpick,
	title = {NITPICK: Peak Identification for Mass Spectrometry Data},
	journal = {BMC Bioinformatics},
	volume = {9},
	year = {2008},
	pages = {355},
	doi = {10.1186/1471-2105-9-355},
	author = {B. Y. Renard and Kirchner, M. and Steen, H. and Judith A. J. Steen and Fred A. Hamprecht}
}
@article {kirchner_07_amsrpm,
	title = {amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R},
	journal = {Journal of Statistical Software},
	volume = {18},
	number = {4},
	year = {2007},
	note = {1},
	pages = {1-12},
	url = {http://www.jstatsoft.org/v18/i04/paper},
	author = {Kirchner, M. and Saussen, B. and Steen, H. and Judith A. J. Steen and Fred A. Hamprecht}
}
