@article {6334,
	title = {ilastik: interactive machine learning for (bio)image analysis},
	journal = {Nature Methods},
	volume = {16},
	year = {2019},
	pages = {1226-1232},
	doi = {10.1038/s41592-019-0582-9},
	author = {Stuart Berg and Kutra, D and Kroeger, T and Christoph N. Straehle and Bernhard X. Kausler and Haubold, C. and Schiegg, M and Ales, J and Thorsten Beier and Rudy, M and Eren, K and Cervantes, JI and Xu, B and Beuttenm{\"u}ller, F and Wolny, A and Zhang, C and Ullrich K{\"o}the and Fred A. Hamprecht and Kreshuk, A}
}
@phdthesis {6257,
	title = {Multicut Algorithms for Neurite Segmentation},
	year = {2018},
	publisher = {Heidelberg University},
	author = {Thorsten Beier}
}
@article {6122,
	title = {Multicut brings automated neurite segmentation closer to human performance},
	journal = {Nature Methods},
	volume = {14},
	year = {2017},
	pages = {101-102},
	doi = {10.1038/nmeth.4151},
	url = {http://rdcu.be/oVDQ},
	author = {Thorsten Beier and Pape, C and Rahaman, N and Prange, T and Stuart Berg and Bock, D and A. Cardona and G. W. Knott and Plaza, S M and Scheffer, L K and Ullrich K{\"o}the and Kreshuk, A and Fred A. Hamprecht}
}
@article {6178,
	title = {Neuron Segmentation with High-Level Biological Priors},
	journal = {IEEE Transactions on Medical Imaging},
	volume = {37},
	year = {2017},
	chapter = {829-839},
	doi = {10.1109/TMI.2017.2712360},
	author = {Krasowki, N and Thorsten Beier and G. W. Knott and Ullrich K{\"o}the and Fred A. Hamprecht and Kreshuk, A.}
}
@article {6213,
	title = {Solving Large Multicut Problems for Connectomics via Domain Decomposition},
	year = {2017},
	pages = {1-10},
	doi = { 10.1109/ICCVW.2017.7},
	author = {Pape, C and Thorsten Beier and Li, P and Jain, V and Brock, D. D. and Kreshuk, A.}
}
@proceedings {6078,
	title = {An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem},
	volume = {LNCS 9906},
	year = {2016},
	pages = {715-730},
	publisher = {Springer},
	doi = { 10.1007/978-3-319-46475-6_44},
	author = {Thorsten Beier and Bj{\"o}rn Andres and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {beier_15_fusion,
	title = {Fusion Moves for Correlation Clustering},
	booktitle = {CVPR. Proceedings},
	year = {2015},
	note = {1},
	pages = {3507-3516},
	author = {Thorsten Beier and Fred A. Hamprecht and J{\"o}rg H. Kappes}
}
@conference {krasowski_15_improving,
	title = {Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors},
	booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015},
	year = {2015},
	note = {1},
	pages = {536-539},
	doi = {10.1109/ISBI.2015.7163929},
	author = {Niko Krasowski and Thorsten Beier and G. W. Knott and Ullrich K{\"o}the and Fred A. Hamprecht and Anna Kreshuk}
}
@conference {kroeger_14_asymmetric,
	title = {Asymmetric Cuts: Joint Image Labeling and Partitioning},
	booktitle = {Pattern Recognition - 36th German Conference, {GCPR} 2014, M{\"u}nster, Germany, September 2-5, 2014, Proceedings},
	year = {2014},
	doi = {10.1007/978-3-319-11752-2_16},
	url = {http://dx.doi.org/10.1007/978-3-319-11752-2_16},
	author = {Thorben Kr{\"o}ger and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Kroeger-2014,
	title = {Asymmetric Cuts: Joint Image Labeling and Partitioning},
	booktitle = {36th German Conference on Pattern Recognition},
	year = {2014},
	author = {Kr{\"o}ger, Thorben and Kappes, J{\"o}rg H. and Thorsten Beier and K{\"o}the, Ullrich and Fred A. Hamprecht}
}
@conference {beier_14_cut,
	title = {Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning},
	booktitle = {2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014},
	year = {2014},
	doi = {10.1109/CVPR.2014.17},
	url = {http://dx.doi.org/10.1109/CVPR.2014.17},
	author = {Thorsten Beier and Thorben Kr{\"o}ger and J{\"o}rg H. Kappes and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@mastersthesis {beier_14_graph,
	title = {Graph based image analysis},
	year = {2014},
	school = {University of Heidelberg},
	author = {Thorsten Beier}
}
@conference {kappes_14_map,
	title = {MAP-Inference on Large Scale Higher-Order Discrete Graphical Models by Fusion Moves},
	booktitle = {Computer Vision - {ECCV} 2014 Workshops - Zurich, Switzerland, September 6-7 and 12, 2014, Proceedings, Part {II}},
	year = {2014},
	doi = {10.1007/978-3-319-16181-5_37},
	url = {http://dx.doi.org/10.1007/978-3-319-16181-5_37},
	author = {J{\"o}rg H. Kappes and Thorsten Beier and Christoph Schn{\"o}rr}
}
@conference {Kappes-2014,
	title = {MAP-Inference on Large Scale Higher-Order Discrete Graphical Models by Fusion Moves},
	booktitle = {International Workshop on Graphical Models in Computer Vision},
	year = {2014},
	author = {Kappes, Jorg Hendrik and Thorsten Beier and Christoph Schn{\"o}rr}
}
@conference {yarkony_14_parallel,
	title = {Parallel Multicut Segmentation via Dual Decomposition},
	booktitle = {New Frontiers in Mining Complex Patterns - Third International Workshop, {NFMCP} 2014, Held in Conjunction with {ECML-PKDD} 2014, Nancy, France, September 19, 2014, Revised Selected Papers},
	year = {2014},
	doi = {10.1007/978-3-319-17876-9_4},
	url = {http://dx.doi.org/10.1007/978-3-319-17876-9_4},
	author = {Julian Yarkony and Thorsten Beier and Pierre Baldi and Fred A. Hamprecht}
}
@conference {andres_12_lazy,
	title = {The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models},
	booktitle = {Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}},
	year = {2012},
	doi = {10.1007/978-3-642-33786-4_12},
	url = {http://dx.doi.org/10.1007/978-3-642-33786-4_12},
	author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Andres12,
	title = {The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models},
	booktitle = {ECCV 2012},
	year = {2012},
	author = {Bj{\"o}rn Andres and J{\"o}rg Hendrik Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Andres12,
	title = {The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models},
	booktitle = {ECCV 2012},
	year = {2012},
	author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {andres2012opengm,
	title = {OpenGM: A C++ Library for Discrete Graphical Models},
	journal = {ArXiv e-prints},
	year = {2012},
	note = {Projectpage: http://hci.iwr.uni-heidelberg.de/opengm2/},
	author = {Bj{\"o}rn Andres and Thorsten Beier and Kappes, J{\"o}rg H.}
}
@conference {andres_11_probabilistic,
	title = {Probabilistic Image Segmentation with Closedness Constraints},
	booktitle = {ICCV, Proceedings},
	year = {2011},
	note = {1},
	pages = {2611 - 2618},
	doi = {10.1109/ICCV.2011.6126550},
	author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Andres11,
	title = {Probabilistic Image Segmentation with Closedness Constraints},
	booktitle = {Proceedings of ICCV},
	year = {2011},
	author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Andres11,
	title = {Probabilistic Image Segmentation with Closedness Constraints},
	booktitle = {Proceedings of ICCV},
	year = {2011},
	author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
