@article {6334, title = {ilastik: interactive machine learning for (bio)image analysis}, journal = {Nature Methods}, volume = {16}, year = {2019}, pages = {1226-1232}, doi = {10.1038/s41592-019-0582-9}, author = {Stuart Berg and Kutra, D and Kroeger, T and Christoph N. Straehle and Bernhard X. Kausler and Haubold, C. and Schiegg, M and Ales, J and Thorsten Beier and Rudy, M and Eren, K and Cervantes, JI and Xu, B and Beuttenm{\"u}ller, F and Wolny, A and Zhang, C and Ullrich K{\"o}the and Fred A. Hamprecht and Kreshuk, A} } @phdthesis {6257, title = {Multicut Algorithms for Neurite Segmentation}, year = {2018}, publisher = {Heidelberg University}, author = {Thorsten Beier} } @article {6122, title = {Multicut brings automated neurite segmentation closer to human performance}, journal = {Nature Methods}, volume = {14}, year = {2017}, pages = {101-102}, doi = {10.1038/nmeth.4151}, url = {http://rdcu.be/oVDQ}, author = {Thorsten Beier and Pape, C and Rahaman, N and Prange, T and Stuart Berg and Bock, D and A. Cardona and G. W. Knott and Plaza, S M and Scheffer, L K and Ullrich K{\"o}the and Kreshuk, A and Fred A. Hamprecht} } @article {6178, title = {Neuron Segmentation with High-Level Biological Priors}, journal = {IEEE Transactions on Medical Imaging}, volume = {37}, year = {2017}, chapter = {829-839}, doi = {10.1109/TMI.2017.2712360}, author = {Krasowki, N and Thorsten Beier and G. W. Knott and Ullrich K{\"o}the and Fred A. Hamprecht and Kreshuk, A.} } @article {6213, title = {Solving Large Multicut Problems for Connectomics via Domain Decomposition}, year = {2017}, pages = {1-10}, doi = { 10.1109/ICCVW.2017.7}, author = {Pape, C and Thorsten Beier and Li, P and Jain, V and Brock, D. D. and Kreshuk, A.} } @proceedings {6078, title = {An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem}, volume = {LNCS 9906}, year = {2016}, pages = {715-730}, publisher = {Springer}, doi = { 10.1007/978-3-319-46475-6_44}, author = {Thorsten Beier and Bj{\"o}rn Andres and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {beier_15_fusion, title = {Fusion Moves for Correlation Clustering}, booktitle = {CVPR. Proceedings}, year = {2015}, note = {1}, pages = {3507-3516}, author = {Thorsten Beier and Fred A. Hamprecht and J{\"o}rg H. Kappes} } @conference {krasowski_15_improving, title = {Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors}, booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015}, year = {2015}, note = {1}, pages = {536-539}, doi = {10.1109/ISBI.2015.7163929}, author = {Niko Krasowski and Thorsten Beier and G. W. Knott and Ullrich K{\"o}the and Fred A. Hamprecht and Anna Kreshuk} } @conference {Kroeger-2014, title = {Asymmetric Cuts: Joint Image Labeling and Partitioning}, booktitle = {36th German Conference on Pattern Recognition}, year = {2014}, author = {Kr{\"o}ger, Thorben and Kappes, J{\"o}rg H. and Thorsten Beier and K{\"o}the, Ullrich and Fred A. Hamprecht} } @conference {kroeger_14_asymmetric, title = {Asymmetric Cuts: Joint Image Labeling and Partitioning}, booktitle = {Pattern Recognition - 36th German Conference, {GCPR} 2014, M{\"u}nster, Germany, September 2-5, 2014, Proceedings}, year = {2014}, doi = {10.1007/978-3-319-11752-2_16}, url = {http://dx.doi.org/10.1007/978-3-319-11752-2_16}, author = {Thorben Kr{\"o}ger and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {beier_14_cut, title = {Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning}, booktitle = {2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014}, year = {2014}, doi = {10.1109/CVPR.2014.17}, url = {http://dx.doi.org/10.1109/CVPR.2014.17}, author = {Thorsten Beier and Thorben Kr{\"o}ger and J{\"o}rg H. Kappes and Ullrich K{\"o}the and Fred A. Hamprecht} } @mastersthesis {beier_14_graph, title = {Graph based image analysis}, year = {2014}, school = {University of Heidelberg}, author = {Thorsten Beier} } @conference {kappes_14_map, title = {MAP-Inference on Large Scale Higher-Order Discrete Graphical Models by Fusion Moves}, booktitle = {Computer Vision - {ECCV} 2014 Workshops - Zurich, Switzerland, September 6-7 and 12, 2014, Proceedings, Part {II}}, year = {2014}, doi = {10.1007/978-3-319-16181-5_37}, url = {http://dx.doi.org/10.1007/978-3-319-16181-5_37}, author = {J{\"o}rg H. Kappes and Thorsten Beier and Christoph Schn{\"o}rr} } @conference {Kappes-2014, title = {MAP-Inference on Large Scale Higher-Order Discrete Graphical Models by Fusion Moves}, booktitle = {International Workshop on Graphical Models in Computer Vision}, year = {2014}, author = {Kappes, Jorg Hendrik and Thorsten Beier and Christoph Schn{\"o}rr} } @conference {yarkony_14_parallel, title = {Parallel Multicut Segmentation via Dual Decomposition}, booktitle = {New Frontiers in Mining Complex Patterns - Third International Workshop, {NFMCP} 2014, Held in Conjunction with {ECML-PKDD} 2014, Nancy, France, September 19, 2014, Revised Selected Papers}, year = {2014}, doi = {10.1007/978-3-319-17876-9_4}, url = {http://dx.doi.org/10.1007/978-3-319-17876-9_4}, author = {Julian Yarkony and Thorsten Beier and Pierre Baldi and Fred A. Hamprecht} } @conference {Andres12, title = {The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models}, booktitle = {ECCV 2012}, year = {2012}, author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {andres_12_lazy, title = {The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models}, booktitle = {Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}}, year = {2012}, doi = {10.1007/978-3-642-33786-4_12}, url = {http://dx.doi.org/10.1007/978-3-642-33786-4_12}, author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {Andres12, title = {The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models}, booktitle = {ECCV 2012}, year = {2012}, author = {Bj{\"o}rn Andres and J{\"o}rg Hendrik Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} } @article {andres2012opengm, title = {OpenGM: A C++ Library for Discrete Graphical Models}, journal = {ArXiv e-prints}, year = {2012}, note = {Projectpage: http://hci.iwr.uni-heidelberg.de/opengm2/}, author = {Bj{\"o}rn Andres and Thorsten Beier and Kappes, J{\"o}rg H.} } @conference {Andres11, title = {Probabilistic Image Segmentation with Closedness Constraints}, booktitle = {Proceedings of ICCV}, year = {2011}, author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {andres_11_probabilistic, title = {Probabilistic Image Segmentation with Closedness Constraints}, booktitle = {ICCV, Proceedings}, year = {2011}, note = {1}, pages = {2611 - 2618}, doi = {10.1109/ICCV.2011.6126550}, author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} } @conference {Andres11, title = {Probabilistic Image Segmentation with Closedness Constraints}, booktitle = {Proceedings of ICCV}, year = {2011}, author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht} }