@proceedings {6078,
title = {An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem},
journal = {ECCV. Proceedings},
volume = {LNCS 9906},
year = {2016},
pages = {715-730},
publisher = {Springer},
doi = { 10.1007/978-3-319-46475-6_44},
author = {Beier, T and Andres, B and Ullrich K{\"o}the and Hamprecht, F. A.}
}
@inbook {6055,
title = {Segmenting and Tracking Multiple Dividing Targets Using ilastik},
booktitle = {Focus on Bio-Image Informatics},
series = {Advances in Anatomy, Embryology and Cell Biology},
volume = {219},
year = {2016},
pages = {199-229},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-319-28549-8_8},
author = {Haubold, C. and Schiegg, M. and Kreshuk, A. and Berg, S. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {6033,
title = {Virtual Raters for Reproducible and Objective Assessments in Radiology},
journal = {Nature Scientific Reports},
volume = {6},
year = {2016},
doi = {10.1038/srep25007},
author = {Kleesiek, J. and Petersen, J. and D{\"o}ring, M. and Maier-Hein, K. and Ullrich K{\"o}the and Wick, W. and Fred A. Hamprecht and M. Bendszus and Biller, A.}
}
@article {kreshuk_15_automated,
title = {Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves},
journal = {Journal of Microscopy},
volume = {259 (2)},
year = {2015},
pages = {143-154},
doi = {10.1111/jmi.12266},
author = {Anna Kreshuk and Walecki, R. and Ullrich K{\"o}the and Gierthm{\"u}hlen, M. and Plachta, D. and Genoud, C. and Haastert-Talini, K. and Fred A. Hamprecht}
}
@article {schiegg_15_graphical,
title = {Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell},
journal = {Bioinformatics},
volume = {31},
number = {6},
year = {2015},
note = {1},
pages = {948-956},
doi = {10.1093/bioinformatics/btu764},
url = {http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref\&ijkey=mTXWsiFrci7R8tc},
author = {Schiegg, M. and Hanslovsky, P. and Haubold, C. and Ullrich K{\"o}the and Hufnagel, L. and Fred A. Hamprecht}
}
@conference {krasowski_15_improving,
title = {Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors},
booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015},
year = {2015},
note = {1},
pages = {536-539},
doi = {10.1109/ISBI.2015.7163929},
author = {Niko Krasowski and Thorsten Beier and Knott, G. W. and Ullrich K{\"o}the and Fred A. Hamprecht and Anna Kreshuk}
}
@conference {schiegg_15_proof-reading,
title = {Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models},
booktitle = {ISBI. Proceedings},
year = {2015},
note = {1},
pages = {394-398},
doi = {10.1109/ISBI.2015.7163895},
author = {Schiegg, M. and Heuer, B. and Haubold, C. and Wolf, S. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {kroeger_14_asymmetric,
title = {Asymmetric Cuts: Joint Image Labeling and Partitioning},
booktitle = {Pattern Recognition - 36th German Conference, {GCPR} 2014, M{\"u}nster, Germany, September 2-5, 2014, Proceedings},
year = {2014},
doi = {10.1007/978-3-319-11752-2_16},
url = {http://dx.doi.org/10.1007/978-3-319-11752-2_16},
author = {Thorben Kr{\"o}ger and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {kreshuk_14_automated,
title = {Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks},
journal = {PLoS ONE},
volume = {9},
year = {2014},
note = {1},
pages = {2},
doi = {10.1371/journal.pone.0087351},
author = {Anna Kreshuk and Ullrich K{\"o}the and Pax, E. and Bock, D. D. and Fred A. Hamprecht}
}
@conference {beier_14_cut,
title = {Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning},
booktitle = {2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014},
year = {2014},
doi = {10.1109/CVPR.2014.17},
url = {http://dx.doi.org/10.1109/CVPR.2014.17},
author = {Thorsten Beier and Thorben Kr{\"o}ger and J{\"o}rg H. Kappes and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {kleesiek_14_ilastik,
title = {ilastik for Multi-modal Brain Tumor Segmentation},
booktitle = {MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace},
year = {2014},
pages = {12-17},
author = {Kleesiek, J. and Biller, A. and Urban, G. and Ullrich K{\"o}the and M. Bendszus and Fred A. Hamprecht}
}
@conference {straehle_14_multiple,
title = {Multiple instance learning with response-optimized random forests},
booktitle = {ICPR. Proceedings},
year = {2014},
note = {1},
pages = {3768 - 3773},
doi = {10.1109/ICPR.2014.647},
author = {Straehle, C. and Kandemir, M. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {koethe_14_simplestorm,
title = {SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy},
journal = {Histochemistry and Cell Biology},
volume = {141},
year = {2014},
note = {1},
pages = {613-627},
doi = {10.1007/s00418-014-1211-4},
author = {Ullrich K{\"o}the and Herrmannsd{\"o}rfer, F. and Kats, I. and Fred A. Hamprecht}
}
@conference {fiaschi_14_tracking,
title = {Tracking indistinguishable translucent objects over time using weakly supervised structured learning},
booktitle = {CVPR. Proceedings},
year = {2014},
note = {1},
pages = {2736 - 2743},
doi = {10.1109/CVPR.2014.356},
author = {Fiaschi, L. and Diego, F. and Karl-Heinz Grosser and Schiegg, M. and Ullrich K{\"o}the and Zlatic, M. and Fred A. Hamprecht}
}
@conference {straehle_13_ksmallest,
title = {K-smallest Spanning Tree Segmentations},
booktitle = {German Conference on Pattern Recognition (DAGM/GCPR). Proceedings},
number = {8142},
year = {2013},
note = {1},
pages = {375-384},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-40602-7_40},
author = {Straehle, C. and Peter, S. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {kroeger_13_learning,
title = {Learning to Segment Neurons with Non-local Quality Measures},
booktitle = {MICCAI 2013. Proceedings, part II},
volume = {8150},
year = {2013},
note = {1},
pages = {419-427},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-40763-5_52},
author = {Thorben Kr{\"o}ger and Mikula, S. and Denk, W. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {straehle_13_weakly,
title = {Weakly supervised learning of image partitioning using decision trees with structured split criteria},
booktitle = {ICCV 2013. Proceedings},
year = {2013},
note = {1},
pages = {1849-1856},
doi = {10.1109/ICCV.2013.232},
author = {Straehle, C. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {andres_11_3d,
title = {3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries},
journal = {Medical Image Analysis},
volume = {16 (2012)},
year = {2012},
note = {1},
pages = {796-805},
doi = {10.1016/j.media.2011.11.004},
author = {Bj{\"o}rn Andres and Ullrich K{\"o}the and Thorben Kr{\"o}ger and Helmstaedter, M. and Briggman, K.L. and Denk, W. and Fred A. Hamprecht}
}
@article {hanselmann_12_active,
title = {Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images},
journal = {Analytical Chemistry},
volume = {85 (1)},
year = {2012},
note = {1},
pages = {147-155},
doi = {10.1021/ac3023313},
author = {Hanselmann, M. and R{\"o}der, J. and Ullrich K{\"o}the and Renard, B. Y. and Heeren, R. M. A. and Fred A. Hamprecht}
}
@conference {kausler_12_discrete,
title = {A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness},
booktitle = {ECCV 2012. Proceedings},
volume = {7574},
year = {2012},
note = {1},
pages = {144-157},
doi = {10.1007/978-3-642-33712-3_11},
author = {Kausler, B. X. and Schiegg, M. and Bj{\"o}rn Andres and Lindner, M. and Ullrich K{\"o}the and Leitte, H. and Wittbrodt, J. and Hufnagel, L. and Fred A. Hamprecht}
}
@conference {andres_12_globally,
title = {Globally Optimal Closed-Surface Segmentation for Connectomics},
booktitle = {ECCV 2012. Proceedings, Part 3},
number = {7574},
year = {2012},
note = {1},
pages = {778-791},
doi = {10.1007/978-3-642-33712-3_56},
author = {Bj{\"o}rn Andres and Thorben Kr{\"o}ger and Briggmann, K. L. and Denk, W. and Norogod, N. and Knott, G. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {andres_12_lazy,
title = {The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models},
booktitle = {Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}},
year = {2012},
doi = {10.1007/978-3-642-33786-4_12},
url = {http://dx.doi.org/10.1007/978-3-642-33786-4_12},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Andres12,
title = {The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models},
booktitle = {ECCV 2012},
year = {2012},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {fiaschi_12_learning,
title = {Learning to Count with Regression Forest and Structured Labels},
journal = {ICPR 2012. Proceedings},
year = {2012},
note = {1},
pages = {2685-2688},
author = {Fiaschi, L. and Nair, R. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {lou_12_quality,
title = {Quality Classification of Microscopic Imagery with Weakly Supervised Learning},
journal = {MICCAI-MLMI. Proceedings},
year = {2012},
note = {1},
pages = {176-183},
doi = {10.1007/978-3-642-35428-1_22},
author = {Lou, X. and Fiaschi, L. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {straehle_12_seeded,
title = {Seeded watershed cut uncertainty estimators for guided interactive segmentation},
booktitle = {CVPR 2012. Proceedings},
year = {2012},
note = {1},
pages = {765 - 772},
doi = {10.1109/CVPR.2012.6247747},
author = {Straehle, C. and Ullrich K{\"o}the and Briggman, K. and Denk, W. and Fred A. Hamprecht}
}
@article {kreshuk_11_automated2,
title = {Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images},
journal = {PLoS ONE},
volume = {6 (10)},
year = {2011},
doi = {10.1371/journal.pone.0024899},
author = {Anna Kreshuk and Straehle, C. N. and Christoph Sommer and Ullrich K{\"o}the and Cantoni, M. and Knott, G. and Fred A. Hamprecht}
}
@conference {kreshuk_11_automated,
title = {Automated Segmentation of Synapses in 3D EM Data},
booktitle = {Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).
Proceedings},
year = {2011},
note = {1},
pages = {220-223},
doi = {10.1109/ISBI.2011.5872392},
author = {Anna Kreshuk and Str{\"a}hle, C. and Christoph Sommer and Ullrich K{\"o}the and Knott, G. and Fred A. Hamprecht}
}
@conference {straehle_11_carving,
title = {Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images},
booktitle = {MICCAI 2011, Proceedings.},
volume = {6891},
year = {2011},
note = {1},
pages = {653-660},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-23623-5_82},
author = {Straehle, C. N. and Ullrich K{\"o}the and Knott, G. and Fred A. Hamprecht}
}
@conference {lou_11_deltr,
title = {DELTR: Digital Embryo Lineage Tree Reconstructor},
booktitle = {Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings},
year = {2011},
note = {1},
pages = {1557-1560},
doi = {10.1109/ISBI.2011.5872698},
author = {Lou, X. and Kaster, F. and Lindner, M. and Kausler, B. and Ullrich K{\"o}the and H{\"o}ckendorf, B. and Wittbrodt, J. and J{\"a}nicke, H. and Fred A. Hamprecht}
}
@conference {sommer_11_ilastik,
title = {ilastik: Interactive Learning and Segmentation Toolkit},
booktitle = {Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings},
year = {2011},
note = {1},
pages = {230-233},
doi = {10.1109/ISBI.2011.5872394},
author = {Christoph Sommer and Str{\"a}hle, C. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {menze_11_on,
title = {On oblique random forests},
booktitle = {European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings.},
year = {2011},
note = {1},
pages = {453-469},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-23783-6_29},
author = {Menze, B. and Kelm, B. H. and Splitthoff, N. and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {andres_11_probabilistic,
title = {Probabilistic Image Segmentation with Closedness Constraints},
booktitle = {ICCV, Proceedings},
year = {2011},
note = {1},
pages = {2611 - 2618},
doi = {10.1109/ICCV.2011.6126550},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@conference {Andres11,
title = {Probabilistic Image Segmentation with Closedness Constraints},
booktitle = {Proceedings of ICCV},
year = {2011},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Thorsten Beier and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {hanselmann_11_sima,
title = {SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists},
journal = {Bioinformatics},
volume = {27 (7)},
year = {2011},
note = {1},
pages = {987-993},
doi = {10.1093/bioinformatics/btr051},
author = {Hanselmann, M. and Bj{\"o}rn Voss and Renard, B. Y. and Lindner, M. and Ullrich K{\"o}the and Kirchner, M. and Fred A. Hamprecht}
}
@article {kirchner_10_computational,
title = {Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments},
journal = {Bioinformatics},
volume = {26 (1)},
year = {2010},
note = {1},
pages = {77-83},
doi = {10.1093/bioinformatics/btp607},
author = {Kirchner, M. and Renard, B. Y. and Ullrich K{\"o}the and Pappin, D. J. and Fred A. Hamprecht and Steen, J. A. J. and Steen, H.}
}
@article {lou_10_deuteration,
title = {Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments},
journal = {Bioinformatics},
volume = {26(12)},
year = {2010},
note = {1},
pages = {1535-1541},
doi = {10.1093/bioinformatics/btq165},
author = {Lou, X. and Kirchner, M. and Renard, B. Y. and Ullrich K{\"o}the and Graf, C. and Lee, C. and Steen, J. A. J. and Steen, H. and Mayer, M. P. and Fred A. Hamprecht}
}
@conference {andres_10_empirical,
title = {An Empirical Comparison of Inference Algorithms for Graphical Models
with Higher Order Factors Using OpenGM},
booktitle = {Pattern Recognition, Proc.~32th DAGM Symposium},
number = {6376},
year = {2010},
note = {1},
pages = {353-362},
doi = {10.1007/978-3-642-15986-2_36},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Ullrich K{\"o}the and Christoph Schn{\"o}rr and Fred A. Hamprecht}
}
@conference {Kappes-DAGM2010,
title = {An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM},
booktitle = {Pattern Recognition, Proc.~32th DAGM Symposium},
year = {2010},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Ullrich K{\"o}the and Christoph Schn{\"o}rr and Fred A. Hamprecht}
}
@conference {koethe_10_geometric,
title = {Geometric Analysis of 3D Electron Microscopy Data},
booktitle = {Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM)},
year = {2010},
note = {1},
pages = {22-26},
author = {Ullrich K{\"o}the and Bj{\"o}rn Andres and Thorben Kr{\"o}ger and Fred A. Hamprecht},
editor = {Ullrich K{\"o}the and Montanvert, A. and Soille, P.}
}
@article {andres_10_how,
title = {How to Extract the Geometry and Topology from Very Large 3D Segmentations},
journal = {ArXiv e-prints},
year = {2010},
note = {1},
url = {http://arxiv.org/abs/1009.6215},
author = {Bj{\"o}rn Andres and Ullrich K{\"o}the and Thorben Kr{\"o}ger and Fred A. Hamprecht}
}
@article {andres_10_lazy,
title = {The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search},
journal = {ArXiv e-prints},
year = {2010},
note = {1},
url = {http://arxiv.org/abs/1009.4102},
author = {Bj{\"o}rn Andres and J{\"o}rg H. Kappes and Ullrich K{\"o}the and Fred A. Hamprecht}
}
@article {andres_10_runtime,
title = {Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x},
journal = {ArXiv e-prints},
year = {2010},
note = {1},
url = {http://arxiv.org/abs/1008.2909v1},
author = {Bj{\"o}rn Andres and Ullrich K{\"o}the and Thorben Kr{\"o}ger and Fred A. Hamprecht}
}
@conference {baehnisch_09_fast,
title = {Fast and Accurate 3D Edge Detection for Surface Reconstruction},
booktitle = {Pattern Recognition},
volume = {5748},
year = {2009},
pages = {111-120},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-03798-6},
author = {B{\"a}hnisch, C. and Stelldinger, P. and Ullrich K{\"o}the}
}
@conference {hanselmann_09_multivariate,
title = {Multivariate Watershed Segmentation of Compositional Data},
booktitle = {Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press},
volume = {5810},
year = {2009},
note = {1},
pages = {180-192},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-04397-0},
author = {Hanselmann, M. and Ullrich K{\"o}the and Renard, B. Y. and Kirchner, M. and Heeren, R. M. A. and Fred A. Hamprecht}
}
@conference {meine_09_pixel,
title = {Pixel Approximation Errors in Common Watershed Algorithms},
booktitle = {Discrete Geometry for Computer Imagery},
volume = {5810},
year = {2009},
note = {1},
pages = {193-202},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-04397-0},
author = {Meine, H. and Ullrich K{\"o}the and Stelldinger, P.}
}
@conference {meine_09_topological,
title = {Pixel Approximation Errors in Common Watershed Algorithms},
booktitle = {Discrete Geometry for Computer Imagery},
volume = {5810},
year = {2009},
pages = {193-202},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-04397-0},
author = {Meine, H. and Ullrich K{\"o}the and Stelldinger, P.}
}
@conference {andres_09_quantitative,
title = {Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times},
booktitle = {Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings},
volume = {5748},
year = {2009},
note = {1},
pages = {502-511},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-642-03798-6},
author = {Bj{\"o}rn Andres and Ullrich K{\"o}the and Bonea, A. and Nadler, B. and Fred A. Hamprecht}
}
@article {frank2009,
title = {Theoretical and experimental error analysis of continuous-wave time-of-flight range cameras},
journal = {Opt. Eng.},
volume = {48},
year = {2009},
pages = {013602},
abstract = {We offer a formal investigation of the measurement principle of time-of-flight 3-D cameras using correlation of amplitude-modulated continuous-wave signals. These sensors can provide both depth maps and IR intensity pictures simultaneously and in real time. We examine the theory of the data acquisition in detail. The variance of the range measurements is derived in a concise way and we show that the computed range follows an offset normal distribution. The impact of quantization of that distribution is discussed. All theoretically investigated errors like the behavior of the variance, depth bias, saturation and quantization effects are supported by experimental results.},
doi = {10.1117/1.3070634},
author = {Mario Frank and Matthias Plaue and Holger Rapp and Ullrich K{\"o}the and Bernd J{\"a}hne and Fred A. Hamprecht}
}
@article {frank_09_theoretical,
title = {Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras},
journal = {Optical Engineering},
volume = {48, 013602},
year = {2009},
note = {1},
doi = {10.1117/1.3070634},
author = {Mario Frank and Matthias Plaue and Holger Rapp and Ullrich K{\"o}the and Bernd J{\"a}hne and Fred A. Hamprecht}
}
@article {hanselmann_09_towards,
title = {Towards Digital Staining using Imaging Mass Spectrometry and Random Forests},
journal = {Journal of Proteome Research},
volume = {8},
year = {2009},
note = {1},
pages = {3558-3567},
doi = {10.1021/pr900253y},
author = {Hanselmann, M. and Ullrich K{\"o}the and Kirchner, M. and Renard, B. Y. and Amstalden, E. R. and Glunde, K. and Heeren, R. M. A. and Fred A. Hamprecht}
}
@article {andres_08_errors-in-variables,
title = {On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation},
journal = {Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on},
year = {2008},
note = {1},
pages = {1-6},
doi = {10.1109/CVPR.2008.4587571},
author = {Bj{\"o}rn Andres and Claudia Kondermann and Daniel Kondermann and Ullrich K{\"o}the and Fred A. Hamprecht and Christoph S. Garbe}
}
@article {koethe_08_reliable-image-analysis,
title = {Reliable Low-Level Image Analysis},
journal = {Habilitation thesis},
year = {2008},
publisher = {Department Informatik, University of Hamburg},
address = {Hamburg},
abstract = {What information give *discrete images* about the *continuous world*?
Image analysis uses discrete methods to make statements about the continuous real world. Since an in
finite amount of information is lost by digitization, it is not obviuous whether or when this approa
ch will succeed: Can one prove that certain properties of interest will be preserved, despite the in
formation loss?
This habilitation thesis considers theories which explicitly connect continuous and discrete models,
such as Shannon{\textquoteright}s famous sampling theorem and a recently discovered geometric sampling theorem. Thi
s analysis reveals important consequences regarding the necessary image quality (e.g. resolution and
signal-to-noise-ratio) and the resulting limits of observation. These findings are subsequently app
lied to a large number of low-level image analysis problems (such edge and corner detection, segment
ation, local estimation, and noise normalization), which leads to significantly improved algorithms
that perform robustly and accurately in accordance to the predictions of theory.},
author = {Ullrich K{\"o}the}
}
@conference {andres_08_segmentation,
title = {Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification},
booktitle = {Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings},
volume = {5096},
year = {2008},
note = {1},
pages = {142-152},
publisher = {Springer},
organization = {Springer},
doi = {10.1007/978-3-540-69321-5_15},
author = {Bj{\"o}rn Andres and Ullrich K{\"o}the and Helmstaedter, M. and Denk, W. and Fred A. Hamprecht},
editor = {Gerhard Rigoll}
}
@article {meine_08_topological,
title = {A Topological Sampling Theorem for Robust Boundary Reconstruction
and Image Segmentation},
journal = {Discrete Applied Mathematics},
volume = {157},
number = {3},
year = {2008},
pages = {524-541},
doi = {10.1016/j.dam.2008.05.031},
author = {Meine, H. and Ullrich K{\"o}the and Stelldinger, P.}
}
@incollection {koethe_08_what,
title = {What Can We Learn from Discrete Images about the Continuous World},
journal = {Discrete Geometry for Computer Imagery},
volume = {4992},
year = {2008},
pages = {4-19},
publisher = {Springer},
doi = {10.1007/978-3-540-79126-3_2},
author = {Ullrich K{\"o}the}
}