M.  Hanselmann, Röder, J., Köthe, U., Renard, B. Y., Heeren, R. M. A., and Hamprecht, F. A., ?Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images?, Analytical Chemistry, vol. 85 (1), pp. 147-155, 2012.

B. Y.  Renard, Xu, B., Kirchner, M., Zickmann, F., Winter, D., Korten, S., Brattig, N., Tzur, A., Hamprecht, F. A., and Steen, H., ?Overcoming species boundaries in peptide identification with BICEPS?, Molecular and Cellular Proteomics, vol. 11, 2012.

M.  Hanselmann, Voss, B., Renard, B. Y., Lindner, M., Köthe, U., Kirchner, M., and Hamprecht, F. A., ?SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists?, Bioinformatics, vol. 27 (7), pp. 987-993, 2011.

M.  Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., ?Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments?, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.

X.  Lou, Kirchner, M., Renard, B. Y., Köthe, U., Graf, C., Lee, C., Steen, J. A. J., Steen, H., Mayer, M. P., and Hamprecht, F. A., ?Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments?, Bioinformatics, vol. 26(12), pp. 1535-1541, 2010.

B. Y.  Renard, Timm, W., Kirchner, M., Steen, J. A. J., Hamprecht, F. A., and Steen, H., ?Estimating the Confidence of Peptide Identifications without Decoy Databases?, Analytical Chemistry, pp. 4314-4318, 2010.

B. Y.  Renard, ?Robust Methods for the Proteomic Data Analysis Pipeline?. University of Heidelberg, 2010.

N.  Ozlu, Monigatti, F., Renard, B. Y., Field, C. M., Steen, H., Mitchison, T. J., and Steen, J. J., ?Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition?, Molecular & Cellular Proteomics, 2009.

M.  Hanselmann, Köthe, U., Renard, B. Y., Kirchner, M., Heeren, R. M. A., and Hamprecht, F. A., ?Multivariate Watershed Segmentation of Compositional Data?, in Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, 2009, vol. 5810, pp. 180-192.

M.  Hanselmann, Köthe, U., Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., ?Towards Digital Staining using Imaging Mass Spectrometry and Random Forests?, Journal of Proteome Research, vol. 8, pp. 3558-3567, 2009.

B. Y.  Renard, Kirchner, M., Monigatti, F., Ivanov, A. R., Rappsilber, J., Winter, D., Steen, J. A. J., Hamprecht, F. A., and Steen, H., ?When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing?, Proteomics, vol. 9, pp. 4978-4984, 2009.

M.  Hanselmann, Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., ?Concise Representation of MS Images by Probabilistic Latent Semantic Analysis?, Analytical Chemistry, vol. 80, pp. 9649-9658, 2008.

B. Y.  Renard, Kirchner, M., Steen, H., Steen, J. A. J., and Hamprecht, F. A., ?NITPICK: Peak Identification for Mass Spectrometry Data?, BMC Bioinformatics, vol. 9, p. 355, 2008.

B. Y.  Renard, ?An Improved Method for Peak Identification in Proteomic Mass Spectrometry Data?, University of Heidelberg, 2007.