B. Y.  Renard, Xu, B., Kirchner, M., Zickmann, F., Winter, D., Korten, S., Brattig, N., Tzur, A., Hamprecht, F. A., and Steen, H., ?Overcoming species boundaries in peptide identification with BICEPS?, Molecular and Cellular Proteomics, vol. 11, 2012.

M.  Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., ?Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments?, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.

X.  Lou, Kirchner, M., Renard, B. Y., Köthe, U., Graf, C., Lee, C., Steen, J. A. J., Steen, H., Mayer, M. P., and Hamprecht, F. A., ?Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments?, Bioinformatics, vol. 26(12), pp. 1535-1541, 2010.

B. Y.  Renard, Timm, W., Kirchner, M., Steen, J. A. J., Hamprecht, F. A., and Steen, H., ?Estimating the Confidence of Peptide Identifications without Decoy Databases?, Analytical Chemistry, pp. 4314-4318, 2010.

M.  Kirchner, Steen, J. A. J., Hamprecht, F. A., and Steen, H., ?MGFp: An Open Mascot Generic Format Parser Library Implementation?, Journal of Proteome Research, vol. 9 (5), p. 27622763, 2010.

N.  Ozlu, Monigatti, F., Renard, B. Y., Field, C. M., Steen, H., Mitchison, T. J., and Steen, J. J., ?Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition?, Molecular & Cellular Proteomics, 2009.

B. Y.  Renard, Kirchner, M., Monigatti, F., Ivanov, A. R., Rappsilber, J., Winter, D., Steen, J. A. J., Hamprecht, F. A., and Steen, H., ?When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing?, Proteomics, vol. 9, pp. 4978-4984, 2009.

J. A. J.  Steen, Steen, H., Georgi, A., Parker, K. C., Springer, M., Kirchner, M., Hamprecht, F. A., and Kirschner, M. W., ?Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis?, Proceedings of the National Academy of Sciences, vol. 105, pp. 6069-6074, 2008.

B. Y.  Renard, Kirchner, M., Steen, H., Steen, J. A. J., and Hamprecht, F. A., ?NITPICK: Peak Identification for Mass Spectrometry Data?, BMC Bioinformatics, vol. 9, p. 355, 2008.

T.  König, Menze, B. H., Kirchner, M., Monigatti, F., Parker, K. C., Patterson, T., Steen, J. J., Hamprecht, F. A., and Steen, H., ?Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics?, Journal of Proteome Research, vol. 7, pp. 3708-3717, 2008.

M.  Kirchner, Saussen, B., Steen, H., Steen, J. A. J., and Hamprecht, F. A., ?amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R?, Journal of Statistical Software, vol. 18, pp. 1-12, 2007.