Lou, X, Schiegg, M and Hamprecht, F A (2014). Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability. IEEE Transactions on Medical Imaging. 33 (4) 849-860

 Lindner, R, Lou, X, Reinstein, J, Shoeman, R L, Hamprecht, F A and Winkler, A (2014). Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation. Journal of The American Society for Mass Spectrometry. 25 1018-1028

 Lou, X, Kloft, M, Rätsch, G and Hamprecht, F A (2014). Structured Learning from Cheap Data. Advanced Structured Prediction. The MIT Press

 Lou, X and Hamprecht, F A (2012). Learning to Segment Dense Cell Nuclei with Shape Prior. CVPR 2012. Proceedings. 1012-1018

 Lou, X, Fiaschi, L, Köthe, U and Hamprecht, F A (2012). Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183

 Lou, X and Hamprecht, F A (2012). Structured Learning from Partial Annotations. ICML 2012. Proceedings. http://icml.cc/discuss/2012/753.html

 Lou, X (2011). Biomedical Data Analysis with Prior Knowledge: Modeling and Learning. University of Heidelberg

 Lou, X, Kaster, F O, Lindner, M, Kausler, B X, Köthe, U, Höckendorf, B, Wittbrodt, J, Jänicke, H and Hamprecht, F A (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560

 Lou, X and Hamprecht, F A (2011). Structured Learning for Cell Tracking. NIPS 2011. Proceedings. 1296-1304

 Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131

 Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541