Berg, S, Kutra, D, Kroeger, T, Straehle, C N, Kausler, B X, Haubold, C, Schiegg, M, Ales, J, Beier, T, Rudy, M, Eren, K, Cervantes, J I, Xu, B, Beuttenmüller, F, Wolny, A, Zhang, C, Köthe, U, Hamprecht, F A and Kreshuk, A (2019). ilastik: interactive machine learning for (bio)image analysis. Nature Methods. 16 1226-1232

 Straehle, C N (2014). Interactive Segmentation, Uncertainty and Learning. University of Heidelberg

 Straehle, C N, Kandemir, M, Köthe, U and Hamprecht, F A (2014). Multiple instance learning with response-optimized random forests. ICPR. Proceedings. 3768 - 3773

 Maco, B, Holtmaat, A, Cantoni, M, Kreshuk, A, Straehle, C N, Hamprecht, F A and Knott, G W (2013). Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PloS one. 8 (2)

 Wanner, S, Straehle, C N and Goldlücke, B (2013). Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields. CVPR 2013. Proceedings. 1011-1018

 Wanner, S, Straehle, C N and Goldlücke, B (2013). Globally consistent multi-label assignment on the ray space of 4D light fields. IEEE Conference on Computer Vision and Pattern Recognition (CVPR)

 Straehle, C N, Peter, S, Köthe, U and Hamprecht, F A (2013). K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384

 Straehle, C N, Köthe, U and Hamprecht, F A (2013). Weakly supervised learning of image partitioning using decision trees with structured split criteria. ICCV 2013. Proceedings. 1849-1856

 Straehle, C N, Köthe, U, Briggman, K, Denk, W and Hamprecht, F A (2012). Seeded watershed cut uncertainty estimators for guided interactive segmentation. CVPR 2012. Proceedings. 765 - 772

 Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)

 Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Knott, G W and Hamprecht, F A (2011). Automated Segmentation of Synapses in 3D EM Data. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 220-223

 Straehle, C N, Köthe, U, Knott, G W and Hamprecht, F A (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660

 Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233

 Straehle, C N (2011). Interactive Segmentation Of Neural Electron Microscopy Data. University of Heidelberg