S.  Berg, Kutra, D., Kroeger, T., Straehle, C. N., Kausler, B. X., Haubold, C., Schiegg, M., Ales, J., Beier, T., Rudy, M., Eren, K., Cervantes, J. I., Xu, B., Beuttenmüller, F., Wolny, A., Zhang, C., Köthe, U., Hamprecht, F. A., and Kreshuk, A., ?ilastik: interactive machine learning for (bio)image analysis?, Nature Methods, vol. 16, pp. 1226-1232, 2019.

C. N.  Straehle, ?Interactive Segmentation, Uncertainty and Learning?. University of Heidelberg, 2014.

C. N.  Straehle, Kandemir, M., Köthe, U., and Hamprecht, F. A., ?Multiple instance learning with response-optimized random forests?, in ICPR. Proceedings, 2014, pp. 3768 - 3773.

B.  Maco, Holtmaat, A., Cantoni, M., Kreshuk, A., Straehle, C. N., Hamprecht, F. A., and Knott, G. W., ?Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons?, PloS one, vol. 8 (2), 2013.

S.  Wanner, Straehle, C. N., and Goldlücke, B., ?Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields?, CVPR 2013. Proceedings, pp. 1011-1018, 2013.

S.  Wanner, Straehle, C. N., and Goldlücke, B., ?Globally consistent multi-label assignment on the ray space of 4D light fields?, in IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013.

C. N.  Straehle, Peter, S., Köthe, U., and Hamprecht, F. A., ?K-smallest Spanning Tree Segmentations?, in German Conference on Pattern Recognition (DAGM/GCPR). Proceedings, 2013, pp. 375-384.

C. N.  Straehle, Köthe, U., and Hamprecht, F. A., ?Weakly supervised learning of image partitioning using decision trees with structured split criteria?, in ICCV 2013. Proceedings, 2013, pp. 1849-1856.

C. N.  Straehle, Köthe, U., Briggman, K., Denk, W., and Hamprecht, F. A., ?Seeded watershed cut uncertainty estimators for guided interactive segmentation?, in CVPR 2012. Proceedings, 2012, pp. 765 - 772.

A.  Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Cantoni, M., Knott, G. W., and Hamprecht, F. A., ?Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images?, PLoS ONE, vol. 6 (10), 2011.

A.  Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Knott, G. W., and Hamprecht, F. A., ?Automated Segmentation of Synapses in 3D EM Data?, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings, 2011, pp. 220-223.

C. N.  Straehle, Köthe, U., Knott, G. W., and Hamprecht, F. A., ?Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images?, in MICCAI 2011, Proceedings., 2011, vol. 6891, pp. 653-660.

C.  Sommer, Straehle, C. N., Köthe, U., and Hamprecht, F. A., ?ilastik: Interactive Learning and Segmentation Toolkit?, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings, 2011, pp. 230-233.

C. N.  Straehle, ?Interactive Segmentation of Neural Electron Microscopy Data?, University of Heidelberg, 2011.