C.  Haubold, Schiegg, M., Kreshuk, A., Berg, S., Köthe, U., and Hamprecht, F. A., ?Segmenting and Tracking Multiple Dividing Targets Using ilastik?, in Focus on Bio-Image Informatics, vol. 219, Springer, 2016, pp. 199-229.

U.  Köthe, Herrmannsdörfer, F., Kats, I., and Hamprecht, F. A., ?SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy?, Histochemistry and Cell Biology, vol. 141, pp. 613-627, 2014.

C. N.  Straehle, Köthe, U., Briggman, K., Denk, W., and Hamprecht, F. A., ?Seeded watershed cut uncertainty estimators for guided interactive segmentation?, in CVPR 2012. Proceedings, 2012, pp. 765 - 772.

M.  Hanselmann, Voss, B., Renard, B. Y., Lindner, M., Köthe, U., Kirchner, M., and Hamprecht, F. A., ?SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists?, Bioinformatics, vol. 27 (7), pp. 987-993, 2011.

B.  Andres, Köthe, U., Helmstaedter, M., Denk, W., and Hamprecht, F. A., ?Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification?, in Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings, 2008, vol. 5096, pp. 142-152.