Publications
] (2016). An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem. ECCV. Proceedings. Springer. LNCS 9906 715-730
Technical Report (4.89 MB)
Technical Report (4.89 MB) (2016). Segmenting and Tracking Multiple Dividing Targets Using ilastik. Focus on Bio-Image Informatics. Springer. 219 199-229 Technical Report (4.46 MB)
Technical Report (4.46 MB) (2016). Virtual Raters for Reproducible and Objective Assessments in Radiology. Nature Scientific Reports. 6 Technical Report (2.81 MB)
Technical Report (2.81 MB) (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154
(2015). Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell. Bioinformatics. 31 948-956. http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref&ijkey=mTXWsiFrci7R8tc Technical Report (534.29 KB)
Technical Report (534.29 KB) (2015). Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539 Technical Report (2.25 MB)
Technical Report (2.25 MB) (2015). Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models. ISBI. Proceedings. 394-398 Technical Report (648.55 KB)
Technical Report (648.55 KB) (2014). Asymmetric Cuts: Joint Image Labeling and Partitioning. Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings. http://dx.doi.org/10.1007/978-3-319-11752-2_16 Technical Report (3.46 MB)
Technical Report (3.46 MB) (2014). Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2 Technical Report (16.66 MB)
Technical Report (16.66 MB) (2014). Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning. 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014. http://dx.doi.org/10.1109/CVPR.2014.17 Technical Report (10.06 MB)
Technical Report (10.06 MB) (2014). ilastik for Multi-modal Brain Tumor Segmentation. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace. 12-17 Technical Report (405.91 KB)
Technical Report (405.91 KB) (2014). Multiple instance learning with response-optimized random forests. ICPR. Proceedings. 3768 - 3773 Technical Report (296.66 KB)
Technical Report (296.66 KB) (2014). SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy. Histochemistry and Cell Biology. 141 613-627 Technical Report (2.29 MB)
Technical Report (2.29 MB) (2014). Tracking indistinguishable translucent objects over time using weakly supervised structured learning. CVPR. Proceedings. 2736 - 2743 Technical Report (1.47 MB)
Technical Report (1.47 MB) (2013). K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384 Technical Report (1.18 MB)
Technical Report (1.18 MB) (2013). Learning to Segment Neurons with Non-local Quality Measures. MICCAI 2013. Proceedings, part II. Springer. 8150 419-427 Technical Report (2.87 MB)
Technical Report (2.87 MB) (2013). Weakly supervised learning of image partitioning using decision trees with structured split criteria. ICCV 2013. Proceedings. 1849-1856 Technical Report (5.97 MB)
Technical Report (5.97 MB) (2012). 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis. 16 (2012) 796-805 Technical Report (20.85 MB)
Technical Report (20.85 MB) (2012). Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images. Analytical Chemistry. 85 (1) 147-155 Technical Report (2.58 MB)
Technical Report (2.58 MB) (2012). A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness. ECCV 2012. Proceedings. 7574 144-157 Technical Report (809.07 KB)
Technical Report (809.07 KB) (2012). Globally Optimal Closed-Surface Segmentation for Connectomics. ECCV 2012. Proceedings, Part 3. 778-791 Technical Report (2.72 MB)
Technical Report (2.72 MB) (2012). The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models. ECCV 2012 Technical Report (532.64 KB)
Technical Report (532.64 KB) (2012). The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12 Technical Report (446.28 KB)
Technical Report (446.28 KB) (2012). Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688 Technical Report (3.66 MB)
Technical Report (3.66 MB) (2012). Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183 Technical Report (4.15 MB)
Technical Report (4.15 MB) (2012). Seeded watershed cut uncertainty estimators for guided interactive segmentation. CVPR 2012. Proceedings. 765 - 772 Technical Report (2.84 MB)
Technical Report (2.84 MB) (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10) Technical Report (290.48 KB)
Technical Report (290.48 KB) (2011). Automated Segmentation of Synapses in 3D EM Data. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).
Proceedings. 220-223
(2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660 Technical Report (1.69 MB)
Technical Report (1.69 MB) (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560 Technical Report (1.44 MB)
Technical Report (1.44 MB) (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233
(2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469 Technical Report (665.33 KB)
Technical Report (665.33 KB) (2011). Probabilistic Image Segmentation with Closedness Constraints. ICCV, Proceedings. 2611 - 2618 Technical Report (8.18 MB)
Technical Report (8.18 MB) (2011). Probabilistic Image Segmentation with Closedness Constraints. Proceedings of ICCV Technical Report (2.95 MB)
Technical Report (2.95 MB) (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993 Technical Report (2.2 MB)
Technical Report (2.2 MB)