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B. Andres, Köthe, U., Kröger, T., Helmstaedter, M., Briggmann, K. L., Denk, W., and Hamprecht, F. A., “3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries”, Medical Image Analysis, vol. 16 (2012), pp. 796-805, 2012.PDF icon Technical Report (20.85 MB)
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M. Hanselmann, Röder, J., Köthe, U., Renard, B. Y., Heeren, R. M. A., and Hamprecht, F. A., “Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images”, Analytical Chemistry, vol. 85 (1), pp. 147-155, 2012.PDF icon Technical Report (2.58 MB)
J. Röder, Kunzmann, K., Nadler, B., and Hamprecht, F. A., “Active Learning with Distributional Estimates”, UAI 2012. Proceedings, pp. 715-725, 2012.PDF icon Technical Report (267.67 KB)
M. Kandemir, Hamprecht, F. A., Wojek, C., and Schmidt, U., “Active machine learning for training an event classification”, Patent, Patent Number WO2017032775 A1, 2017.
X. Lou, Schiegg, M., and Hamprecht, F. A., “Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability”, IEEE Transactions on Medical Imaging, vol. 33 (4), pp. 849-860, 2014.PDF icon Technical Report (6.84 MB)
C. Kondermann, Kondermann, D., Jähne, B., Garbe, C. S., Schnörr, C., and Jähne, B., “An adaptive confidence measure for optical flows based on linear subspace projections”, in Proceedings of the 29th DAGM Symposium on Pattern Recognition, 2007, vol. 4713, p. 132--141.
L. Görlitz, Hamprecht, F. A., and Staudacher, M., “Allocation of particles to development processes”, Patent, 2009.PDF icon Technical Report (406.7 KB)
M. Kirchner, Saussen, B., Steen, H., Steen, J. A. J., and Hamprecht, F. A., “amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R”, Journal of Statistical Software, vol. 18, pp. 1-12, 2007.
M. Hayn, Beirle, S., Hamprecht, F. A., Platt, U., Menze, B. H., and Wagner, T., “Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model”, Atmospheric Chemistry and Physics, vol. 9, pp. 9367-9398, 2009.PDF icon Technical Report (2.52 MB)
M. Jäger, Kiel, A., Herten, D. - P., and Hamprecht, F. A., “Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process”, ChemPhysChem, vol. 10:14, pp. 2486-2495, 2009.
T. König, Hamprecht, F. A., and Kücherer, H., “On the Application of Multiscale Motion Estimation in Intravascular Elastography”, University of Heidelberg, 2005.
T. Kröger, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Asymmetric Cuts: Joint Image Labeling and Partitioning”, in Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings, 2014.PDF icon Technical Report (3.46 MB)
T. Kröger, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Asymmetric Cuts: Joint Image Labeling and Partitioning”, in 36th German Conference on Pattern Recognition, 2014.
B. F. Tek, Kröger, T., Mikula, S., and Hamprecht, F. A., “Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue”, in ISBI. Proceedings, 2014, pp. 69-72.PDF icon Technical Report (533.92 KB)
A. Kreshuk, Stankiewicz, M., Lou, X., Kirchner, M., Hamprecht, F. A., and Mayer, M. P., “Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon”, International Journal of Mass Spectrometry, vol. 302, pp. 125-131, 2010.PDF icon Technical Report (3.22 MB)
A. Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Cantoni, M., Knott, G. W., and Hamprecht, F. A., “Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images”, PLoS ONE, vol. 6 (10), 2011.PDF icon Technical Report (290.48 KB)
A. Kreshuk, Köthe, U., Pax, E., Bock, D. D., and Hamprecht, F. A., “Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks”, PLoS ONE, vol. 9, p. 2, 2014.PDF icon Technical Report (16.66 MB)
B. Michael Kelm, Menze, B. H., Zechmann, C. M., Baudendistel, K. T., and Hamprecht, F. A., “Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification”, Magnetic Resonance in Medicine, vol. 57, pp. 150-159, 2007.PDF icon Technical Report (348.05 KB)
F. Diego, Reichinnek, S., Both, M., and Hamprecht, F. A., “Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning”, ISBI 2013. Proceedings, pp. 1058-1061, 2013.PDF icon Technical Report (2.82 MB)
R. Mikut, Dickmeis, T., Driever, W., Geurts, P., Hamprecht, F. A., Kausler, B. X., Ledesma-Carbayo, M., Marée, R., Mikula, K., Pantazis, P., Ronneberger, O., Santos, A., and Stotzka, R., “Automated Processing of Zebrafish Imaging Data: A Survey”, Zebrafish, vol. 10 (3), 2013.PDF icon Technical Report (1.73 MB)
A. Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Knott, G. W., and Hamprecht, F. A., “Automated Segmentation of Synapses in 3D EM Data”, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011). Proceedings, 2011, pp. 220-223.
A. Kreshuk, Walecki, R., Köthe, U., Gierthmühlen, M., Plachta, D., Genoud, C., Haastert-Talini, K., and Hamprecht, F. A., “Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves”, Journal of Microscopy, vol. 259 (2), pp. 143-154, 2015.
C. M. Zechmann, Menze, B. H., Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Delorme, S., Hamprecht, F. A., and Bachert, P., “Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer”, Academic Radiology, vol. 19, 6, pp. 675-684, 2012.
B. Michael Kelm, Menze, B. H., and Hamprecht, F. A., “Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen”, in VDI-Berichte, 2005, vol. 1883, pp. 457-466.PDF icon Technical Report (221.54 KB)
M. Jäger, Knoll, C., and Hamprecht, F. A., “Automatisierte Klassifikation von Laserschwei\DFprozessen durch Nutzung von 3D Signalverarbeitungs-Algorithmen”. Robert Bosch GmbH, Schwieberdingen and IWR, Uni Heidelberg, 2005.
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B. Michael Kelm, Müller, N., Menze, B. H., and Hamprecht, F. A., “Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM”, in Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis), 2006, pp. 96-103.PDF icon Technical Report (232.69 KB)
M. Hissmann and Hamprecht, F. A., “Bayesian surface estimation for white light interferometry”, Optical Engineering, vol. 44, pp. 1-9, 2005.PDF icon Technical Report (549.46 KB)
M. Hissmann and Hamprecht, F. A., “Bayessche Schätzung von Höhenkarten aus der Wei\DF licht-Interferometrie”, in Oberflächenmesstechnik 2003, 2003, p. 187--196.
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C. M. Zechmann, Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Röll, S., Delorme, S., Hamprecht, F. A., and Bachert, P., “Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients”, in Proceedings of the 16th ISMRM, 2006.PDF icon Technical Report (664.38 KB)
C. N. Straehle, Köthe, U., Knott, G. W., and Hamprecht, F. A., “Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images”, in MICCAI 2011, Proceedings., 2011, vol. 6891, pp. 653-660.PDF icon Technical Report (1.69 MB)
C. Zhang, Yarkony, J., and Hamprecht, F. A., “Cell detection and segmentation using correlation clustering”, in MICCAI. Proceedings, 2014, pp. 9-16.PDF icon Technical Report (8.06 MB)
M. Kandemir and Hamprecht, F. A., “Cell event detection in phase-contrast microscopy sequences from few annotations”, MICCAI. Proceedings, vol. LNCS 9351. Springer, pp. 316-323, 2015.PDF icon Technical Report (564.69 KB)
F. A. Hamprecht, Thiel, W., and van Gunsteren, W. F., “Chemical library subset selection algorithms: a unified derivation using spatial statistics”, Journal of Chemical Information and Computer Sciences, vol. 42, pp. 414-428, 2002.
B. Michael Kelm, Menze, B. H., Neff, T., Zechmann, C. M., and Hamprecht, F. A., “CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.”, in Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, 2006, pp. 51-55.PDF icon Technical Report (275.25 KB)
F. A. Hamprecht, “Classification”, Practical Handbook on Image Processing for Scientific and Technical Applications. CRC Press, pp. 509-519, 2004.PDF icon Technical Report (320.84 KB)

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