Publications
3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis. 16 (2012) 796-805
Technical Report (20.85 MB)
(2012). 
Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images. Analytical Chemistry. 85 (1) 147-155
Technical Report (2.58 MB)
(2012). 
Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)
Technical Report (290.48 KB)
(2011). 
Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2
Technical Report (16.66 MB)
(2014). 
Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154
(2015). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83
Technical Report (380.19 KB)
(2010). 
Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541
Technical Report (518.01 KB)
(2010). 
On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6
Technical Report (1.58 MB)
(2008). 
Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell. Bioinformatics. 31 948-956. http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref&ijkey=mTXWsiFrci7R8tc
Technical Report (534.29 KB)
(2015). 
How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215
Technical Report (1.44 MB)
(2010). 
The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102
Technical Report (625.06 KB)
(2010). 
Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688
Technical Report (3.66 MB)
(2012). 
Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183
Technical Report (4.15 MB)
(2012). 
Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x. ArXiv e-prints. http://arxiv.org/abs/1008.2909v1
Technical Report (415.54 KB)
(2010). 
SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993
Technical Report (2.2 MB)
(2011). 
SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy. Histochemistry and Cell Biology. 141 613-627
Technical Report (2.29 MB)
(2014). 
Theoretical and experimental error analysis of continuous-wave time-of-flight range cameras. Opt. Eng. 48 013602
(2009). Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras. Optical Engineering. 48, 013602
Technical Report (2.03 MB)
(2009). 
A Topological Sampling Theorem for Robust Boundary Reconstruction
and Image Segmentation. Discrete Applied Mathematics. 157 524-541
(2008). Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567
Technical Report (1.47 MB)
(2009). 
Virtual Raters for Reproducible and Objective Assessments in Radiology. Nature Scientific Reports. 6
Technical Report (2.81 MB)
(2016). 
Reliable Low-Level Image Analysis. Habilitation thesis. Department Informatik, University of Hamburg, Hamburg
Technical Report (12.44 MB)
(2008). 