Publications
When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984
Technical Report (901.78 KB)
(2009). 
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717
Technical Report (1.16 MB)
(2008). 
Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11
Technical Report (444.6 KB)
(2012). 
NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355
Technical Report (643.89 KB)
(2008). 
MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763
Technical Report (125.18 KB)
(2010). 
Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318
Technical Report (619.11 KB)
(2010). 
Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074
Technical Report (173.02 KB)
(2008). 
Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541
Technical Report (518.01 KB)
(2010). 
Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83
Technical Report (380.19 KB)
(2010). 
Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics
(2009). amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R. Journal of Statistical Software. 18 1-12. http://www.jstatsoft.org/v18/i04/paper
(2007).