Publications
] (2009). Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192
Technical Report (1.25 MB)
Technical Report (1.25 MB) (2014). Multiple instance learning with response-optimized random forests. ICPR. Proceedings. 3768 - 3773 Technical Report (296.66 KB)
Technical Report (296.66 KB) (2013). Learning to Segment Neurons with Non-local Quality Measures. MICCAI 2013. Proceedings, part II. Springer. 8150 419-427 Technical Report (2.87 MB)
Technical Report (2.87 MB) (2012). The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models. ECCV 2012 Technical Report (532.64 KB)
Technical Report (532.64 KB) (2012). The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12 Technical Report (446.28 KB)
Technical Report (446.28 KB) (2013). K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384 Technical Report (1.18 MB)
Technical Report (1.18 MB) (2015). Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539 Technical Report (2.25 MB)
Technical Report (2.25 MB) (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233
(2014). ilastik for Multi-modal Brain Tumor Segmentation. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace. 12-17 Technical Report (405.91 KB)
Technical Report (405.91 KB) (2012). Globally Optimal Closed-Surface Segmentation for Connectomics. ECCV 2012. Proceedings, Part 3. 778-791 Technical Report (2.72 MB)
Technical Report (2.72 MB) (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26 Technical Report (1.43 MB)
Technical Report (1.43 MB) (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26 Technical Report (1.43 MB)
Technical Report (1.43 MB) (2009). Fast and Accurate 3D Edge Detection for Surface Reconstruction. Pattern Recognition. Springer. 5748 111-120
(2010). An Empirical Comparison of Inference Algorithms for Graphical Models
with Higher Order Factors Using OpenGM. Pattern Recognition, Proc.~32th DAGM Symposium. 353-362
(2010). An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM. Pattern Recognition, Proc.~32th DAGM Symposium Technical Report (218.43 KB)
Technical Report (218.43 KB) (2012). A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness. ECCV 2012. Proceedings. 7574 144-157 Technical Report (809.07 KB)
Technical Report (809.07 KB) (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560 Technical Report (1.44 MB)
Technical Report (1.44 MB) (2014). Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning. 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014. http://dx.doi.org/10.1109/CVPR.2014.17 Technical Report (10.06 MB)
Technical Report (10.06 MB) (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660 Technical Report (1.69 MB)
Technical Report (1.69 MB) (2011). Automated Segmentation of Synapses in 3D EM Data. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).
Proceedings. 220-223
(2014). Asymmetric Cuts: Joint Image Labeling and Partitioning. Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings. http://dx.doi.org/10.1007/978-3-319-11752-2_16 Technical Report (3.46 MB)
Technical Report (3.46 MB) (2016). Segmenting and Tracking Multiple Dividing Targets Using ilastik. Focus on Bio-Image Informatics. Springer. 219 199-229 Technical Report (4.46 MB)
Technical Report (4.46 MB)