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2018

Fortun, D, Storath, M, Rickert, D, Weinmann, A and Unser, M (2018). Fast Piecewise-Affine Motion Estimation Without Segmentation. IEEE Transactions on Image Processing. 27 5612 - 5624

Weiler, M, Hamprecht, F A and Storath, M (2018). Learning Steerable Filters for Rotation Equivariant CNNs. CVPR. Proceedings. 849-858

Technical Report (1.35 MB)

Erb, W, Weinmann, A, Ahlborg, M, Brandt, C, Bringout, G, Buzug, T M, Frikel, J, Kaethner, C, Knopp, T, März, T, Möddel, M, Storath, M and Weber, A (2018). Mathematical Analysis of the 1D Model and Reconstruction Schemes for Magnetic Particle Imaging. Inverse Problems. 34

Kiechle, M, Storath, M, Weinmann, A and Kleinsteuber, M (2018). Model-based learning of local image features for unsupervised texture segmentation. IEEE Transactions on Image Processing. 27 1994-2007

Wolf, S, Pape, C, Bailoni, A, Rahaman, N, Kreshuk, A, Köthe, U and Hamprecht, F A (2018). The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11208 LNCS 571–587. http://arxiv.org/abs/1904.12654

Wolf, S, Pape, C, Bailoni, A, Rahaman, N, Kreshuk, A, Köthe, U and Hamprecht, F A (2018). The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV. Proceedings. Springer. 571-587

Bredies, K, Holler, M, Storath, M and Weinmann, A (2018). Total Generalized Variation for Manifold-valued Data. SIAM Journal on Imaging Sciences. 11 1785 - 1848

2017

Kandemir, M, Hamprecht, F A, Wojek, C and Schmidt, U (2017). Active machine learning for training an event classification. Patent, Patent Number WO2017032775 A1

Storath, M, Brandt, C, Hofmann, M, Knopp, T, Salamon, J, Weber, A and Weinmann, A (2017). Edge preserving and noise reducing reconstruction for magnetic particle imaging. IEEE Transactions on Medical Imaging. 36 74 - 85

Technical Report (1.43 MB)

Storath, M, Rickert, D, Unser, M and Weinmann, A (2017). Fast segmentation from blurred data in 3D fluorescence microscopy. IEEE Transactions on Image Processing. 26

Storath, M, Weinmann, A and Unser, M (2017). Jump-penalized least absolute values estimation of scalar or circle-valued signals. Information and Inference. 6 225–245

Technical Report (3.4 MB)

Wolf, S, Schott, L, Köthe, U and Hamprecht, F A (2017). Learned Watershed: End-to-End Learning of Seeded Segmentation. ICCV. 2030-2038

Technical Report (3.76 MB)

Weiler, M (2017). Learning Steerable Filters For Rotation Equivariant Convolutional Neural Networks. Heidelberg University

Brattoli, B, Büchler, U, Wahl, A - S, Schwab, M E and Ommer, B (2017). LSTM Self-Supervision for Detailed Behavior Analysis. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). (BB and UB contributed equally)

Article (8.75 MB)

Kandemir, M, Hamprecht, F A, Wojek, C and Schmidt, U (2017). Maschinelles Lernen. Patent, Patent Number WO2017032775A1

Technical Report (317.04 KB)

Ulman, V, Maška, M, Magnusson, K E G, Ronneberger, O, Haubold, C, Harder, N, Matula, P, Matula, P, Svoboda, D, Radojevic, M, Smal, I, Rohr, K, Jaldén, J, Blau, H M, Dzyubachyk, O, Lelieveldt, B, Xiao, P, Li, Y, Cho, S - Y, Dufour, A, Olivo-Marin, J C, Reyes-Aldasoro, C C, Solis-Lemus, J A, Bensch, R, Brox, T, Stegmaier, J, Mikut, R, Wolf, S, Hamprecht, F A, Esteves, T, Quelhas, P, Demirel, Ö, Malström, L, Jug, F, Tomančák, P, Meijering, E, Muñoz-Barrutia, A, Kozubek, M and Ortiz-de-Solorzano, C (2017). An Objective Comparison of Cell Tracking Algorithms. Nature Methods. 14 1141-1152

Technical Report (4.24 MB)

Wahl, A - S, Büchler, U, Brändli, A, Brattoli, B, Musall, S, Kasper, H, Ineichen, B V, Helmchen, F, Ommer, B and Schwab, M E (2017). Optogenetically stimulating the intact corticospinal tract post-stroke restores motor control through regionalized functional circuit formation. Nature Communications. (ASW & UB contributed equally; BO and MES contributed equally). https://www.nature.com/articles/s41467-017-01090-6

2016

Wolf, S (2016). Cell Tracking With Graphical Model Using Higher Order Features On Track Segments. University of Heidelberg

Baust, M, Weinmann, A, Wieczorek, M, Lasser, T, Storath, M and Navab, N (2016). Combined Tensor Fitting and TV Regularization in Diffusion Tensor Imaging based on a Riemannian Manifold Approach. IEEE Transactions on Medical Imaging. 35 1972–1989

Technical Report (8.65 MB)

Haubold, C, Ales, J, Wolf, S and Hamprecht, F A (2016). A Generalized Successive Shortest Paths Solver for Tracking Dividing Targets. ECCV. Proceedings. Springer. LNCS 9911 566-582

Technical Report (1.18 MB)

Biller, A, Badde, S, Nagel, A, Neumann, J O, Wick, W, Hertenstein, A, Bendszus, M, Sahm, F, Benkhedah, N and Kleesiek, J (2016). Improved Brain Tumor Classification by Sodium MR Imaging: Prediction of IDH Mutation Status and Tumor Progression. American Journal of Neuroradiology. 37 66-73

Stefanoiu, A, Weinmann, A, Storath, M, Navab, N and Baust, M (2016). Joint Segmentation and Shape Regularization with a Generalized Forward Backward Algorithm. IEEE Transactions on Image Processing. 25 3384 - 3394

Technical Report (3.55 MB)

Kleesiek, J, Petersen, J, Döring, M, Maier-Hein, K, Köthe, U, Wick, W, Hamprecht, F A, Bendszus, M and Biller, A (2016). Virtual Raters for Reproducible and Objective Assessments in Radiology. Nature Scientific Reports. 6

Technical Report (2.81 MB)

2015

Biesdorf, A, Wörz, S, von Tengg-Kobligk, H, Rohr, K and Schnörr, C (2015). 3D Segmentation of Vessels by Incremental Implicit Polynomial Fitting and Convex Optimization. Proc.~ISBI

Technical Report (611.33 KB)

Kreshuk, A, Walecki, R, Köthe, U, Gierthmühlen, M, Plachta, D, Genoud, C, Haastert-Talini, K and Hamprecht, F A (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154

Diebold, M, Blum, O, Gutsche, M, Wanner, S, Garbe, C, Baker, H and Jähne, B (2015). Light-field camera design for high-accuracy depth estimation. Videometrics, Range Imaging, and Applications XIII. SPIE

Diebold, M, Blum, O, Gutsche, M, Wanner, S, Garbe, C S, Baker, H and Jähne, B (2015). Light-field camera design for high-accuracy depth estimation. Videometrics, Range Imaging, and Applications XIII

Mesarchaki, E, Kräuter, C, Krall, K Ellen, Bopp, M, Helleis, F, Williams, J and Jähne, B (2015). Measuring air–sea gas-exchange velocities in a large-scale annular wind–wave tank. Ocean Sci. 11 121--138

Schiegg, M, Heuer, B, Haubold, C, Wolf, S, Köthe, U and Hamprecht, F A (2015). Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models. ISBI. Proceedings. 394-398

Technical Report (648.55 KB)

Antic, B, Büchler, U, Wahl, A - S, Schwab, M E and Ommer, B (2015). Spatiotemporal Parsing of Motor Kinematics for Assessing Stroke Recovery. Medical Image Computing and Computer-Assisted Intervention. Springer

Article (2.24 MB)

2014

Wahl, A - S, Omlor, W, Rubio, J C, Chen, J L, Zheng, H, Schröter, A, Gullo, M, Weinmann, O, Kobayashi, K, Helmchen, F, Ommer, B and Schwab, M E (2014). Asynchronous Therapy Restores Motor Control by Rewiring of the Rat Corticospinal Tract after Stroke. Science. American Association for The Advancement of Science. 344 1250--1255. http://www.sciencemag.org/content/344/6189/1250

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