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Publications

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Author Title [ Type(Desc)] Year
Filters: Author is Judith A. J. Steen  [Clear All Filters]
Journal Article
M. Kirchner, Saussen, B., Steen, H., Steen, J. A. J., and Hamprecht, F. A., “amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R”, Journal of Statistical Software, vol. 18, pp. 1-12, 2007.
M. Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., “Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments”, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.PDF icon Technical Report (380.19 KB)
X. Lou, Kirchner, M., Renard, B. Y., Köthe, U., Graf, C., Lee, C., Steen, J. A. J., Steen, H., Mayer, M. P., and Hamprecht, F. A., “Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments”, Bioinformatics, vol. 26(12), pp. 1535-1541, 2010.PDF icon Technical Report (518.01 KB)
J. A. J. Steen, Steen, H., Georgi, A., Parker, K. C., Springer, M., Kirchner, M., Hamprecht, F. A., and Kirschner, M. W., “Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis”, Proceedings of the National Academy of Sciences, vol. 105, pp. 6069-6074, 2008.PDF icon Technical Report (173.02 KB)
B. Y. Renard, Timm, W., Kirchner, M., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “Estimating the Confidence of Peptide Identifications without Decoy Databases”, Analytical Chemistry, pp. 4314-4318, 2010.PDF icon Technical Report (619.11 KB)
M. Kirchner, Steen, J. A. J., Hamprecht, F. A., and Steen, H., “MGFp: An Open Mascot Generic Format Parser Library Implementation”, Journal of Proteome Research, vol. 9 (5), p. 27622763, 2010.PDF icon Technical Report (125.18 KB)
B. Y. Renard, Kirchner, M., Steen, H., Steen, J. A. J., and Hamprecht, F. A., “NITPICK: Peak Identification for Mass Spectrometry Data”, BMC Bioinformatics, vol. 9, p. 355, 2008.PDF icon Technical Report (643.89 KB)
B. Y. Renard, Kirchner, M., Monigatti, F., Ivanov, A. R., Rappsilber, J., Winter, D., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing”, Proteomics, vol. 9, pp. 4978-4984, 2009.PDF icon Technical Report (901.78 KB)