Publications

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Conference Proceedings
Kandemir, M and Hamprecht, F A (2015). Cell event detection in phase-contrast microscopy sequences from few annotations. MICCAI. Proceedings. Springer. LNCS 9351 316-323PDF icon Technical Report (564.69 KB)
Haußmann, M, Hamprecht, F A and Kandemir, M (2019). Deep Active Learning with Adaptive Acquisition. IJCAI. Proceedings, in press
Kandemir, M and Hamprecht, F A (2015). The Deep Feed-Forward Gaussian Process: An Effective Generalization to Covariance Priors. NIPS. Proceedings. 44 145-159PDF icon Supplementary Material (223.39 KB)PDF icon Technical Report (2.58 MB)
Haubold, C, Uhlmann, V, Unser, M and Hamprecht, F A (2017). Diverse M-best Solutions by Dynamic Programming. GCPR. Proceedings. Springer. LNCS 10496 255-267
Weiler, M, Hamprecht, F A and Storath, M (2018). Learning Steerable Filters for Rotation Equivariant CNNs. CVPR
(2007). Pattern Recognition -- 29th DAGM Symposium. Springer. 4713
Schnörr, C and Jähne, B (2007). Pattern Recognition, 29th DAGM Symposium, Heidelberg, Germany, September 12-14. Springer. 4713
Haußmann, M, Hamprecht, F A and Kandemir, M (2019). Sampling-Free Variational Inference of Bayesian Neural Networks by Variance Backpropagation. UAI. Proceedings, in press
Diego, F and Hamprecht, F A (2016). Structured Regression Gradient Boosting. CVPR. Proceedings. 1459-1467PDF icon Technical Report (3.97 MB)
Kreshuk, A, Funke, J, Cardona, A and Hamprecht, F A (2015). Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain. MICCAI. Proceedings. Springer. LNCS 9349 661-668PDF icon Technical Report (2.14 MB)
In Collection
Hamprecht, F A (2004). Classification. Practical Handbook on Image Processing for Scientific and Technical Applications. CRC Press. 509-519PDF icon Technical Report (320.84 KB)
Hader, S and Hamprecht, F A (2003). Efficient Density Clustering. Between Data Science and Applied Data Analysis. Springer. 39-48
Hamprecht, F A and Agrell, E (2003). Exploring a space of materials: spatial sampling design and subset selection. Experimental Design for Combinatorial and High Throughput Materials Development. WileyPDF icon Technical Report (2.28 MB)
Eisele, H and Hamprecht, F A (2003). A new approach for defect detection in X-ray CT images. Pattern Recognition. Springer. 2449 345-352PDF icon Technical Report (398.88 KB)
Lou, X, Kloft, M, Rätsch, G and Hamprecht, F A (2014). Structured Learning from Cheap Data. Advanced Structured Prediction. The MIT PressPDF icon Technical Report (8.35 MB)
Hader, S and Hamprecht, F A (2004). Two-Stage Classification with Automatic Feature Selection for an Industrial Application. Classification, the ubiquitous challenge: Proceedings of GfKl 2004. Springer. 137-144PDF icon Technical Report (518.16 KB)
Journal Article
Andres, B, Köthe, U, Kröger, T, Helmstaedter, M, Briggman, K L, Denk, W and Hamprecht, F A (2012). 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis. 16 (2012) 796-805PDF icon Technical Report (20.85 MB)
Hanselmann, M, Röder, J, Köthe, U, Renard, B Y, Heeren, R M A and Hamprecht, F A (2012). Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images. Analytical Chemistry. 85 (1) 147-155PDF icon Technical Report (2.58 MB)
Röder, J, Kunzmann, K, Nadler, B and Hamprecht, F A (2012). Active Learning with Distributional Estimates. UAI 2012. Proceedings. 715-725PDF icon Technical Report (267.67 KB)
Lou, X, Schiegg, M and Hamprecht, F A (2014). Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability. IEEE Transactions on Medical Imaging. 33 (4) 849-860PDF icon Technical Report (6.84 MB)
Görlitz, L, Hamprecht, F A and Staudacher, M (2009). Allocation of particles to development processes. PatentPDF icon Technical Report (406.7 KB)
Kirchner, M, Saussen, B, Steen, H, Steen, J A J and Hamprecht, F A (2007). amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R. Journal of Statistical Software. 18 1-12. http://www.jstatsoft.org/v18/i04/paper
Hayn, M, Beirle, S, Hamprecht, F A, Platt, U, Menze, B H and Wagner, T (2009). Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model. Atmospheric Chemistry and Physics. 9 9367-9398PDF icon Technical Report (2.52 MB)
Jäger, M, Kiel, A, Herten, D - P and Hamprecht, F A (2009). Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process. ChemPhysChem. 10:14 2486-2495
Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131PDF icon Technical Report (3.22 MB)
Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)PDF icon Technical Report (290.48 KB)
Kreshuk, A, Köthe, U, Pax, E, Bock, D D and Hamprecht, F A (2014). Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2PDF icon Technical Report (16.66 MB)
Kelm, B M, Menze, B H, Zechmann, C M, Baudendistel, K T and Hamprecht, F A (2007). Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification. Magnetic Resonance in Medicine. 57 150-159PDF icon Technical Report (348.05 KB)
Diego, F, Reichinnek, S, Both, M and Hamprecht, F A (2013). Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning. ISBI 2013. Proceedings. 1058-1061PDF icon Technical Report (2.82 MB)
Mikut, R, Dickmeis, T, Driever, W, Geurts, P, Hamprecht, F A, Kausler, B X, Ledesma-Carbayo, M, Marée, R, Mikula, K, Pantazis, P, Ronneberger, O, Santos, A and Stotzka, R (2013). Automated Processing of Zebrafish Imaging Data: A Survey. Zebrafish. 10 (3)PDF icon Technical Report (1.73 MB)

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