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Journal Article

Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318

Technical Report (619.11 KB)

Kelm, B Michael, Menze, B H, Nix, O, Zechmann, C M and Hamprecht, F A (2009). Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge. IEEE Transaction on Medical Imaging. 28:10 1534-1547

Technical Report (419.8 KB)

Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6

Technical Report (1.58 MB)

Hehn, T M, Kooij, J F P and Hamprecht, F A (2020). End-to-End Learning of Decision Trees and Forests. International Journal of Computer Vision. 128 997-1011

Lichy, M P, Bachert, P, Hamprecht, F A, Weber, M - A, Debus, J, Schulz-Ertner, D, Kauczor, H - U and Schlemmer, H - P (2006). Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren. Zeitung für Röntgenforschung. 178 627-633

Funke, J, Andres, B, Hamprecht, F A, Cardona, A and Cook, M (2012). Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data. CVPR 2012. Proceedings. 1004-1011

Technical Report (1.64 MB)

Uhlmann, V, Haubold, C, Hamprecht, F A and Unser, M (2017). Diverse Shortest Paths for Bioimage Analysis. Bioinformatics. 1-3

Vijayan, A, Tofanelli, R, Strauss, S, Cerrone, L, Wolny, A, Strohmeier, J, Kreshuk, A, Hamprecht, F A, Smith, R S and Schneitz, K (2021). A Digital 3D Reference Atlas Reveals Cellular Growth Patterns Shaping the Arabidopsis Ovule. eLife

Steen, J A J, Steen, H, Georgi, A, Parker, K C, Springer, M, Kirchner, M, Hamprecht, F A and Kirschner, M W (2008). Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074

Technical Report (173.02 KB)

Hamprecht, F A, Cohen, A J, Tozer, D J and Handy, N C (1998). Development and assessment of new exchange-correlation functionals. Journal of Chemical Physics. 109 6264-6271

Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541

Technical Report (518.01 KB)

Frank, M, Plaue, M and Hamprecht, F A (2009). Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures. Optical Engineering. 48, 077003

Technical Report (2.5 MB)

Maco, B, Holtmaat, A, Cantoni, M, Kreshuk, A, Straehle, C N, Hamprecht, F A and Knott, G W (2013). Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PloS one. 8 (2)

Technical Report (2.13 MB)

Hanselmann, M, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2008). Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658

Technical Report (3.91 MB)

Kandemir, M and Hamprecht, F A (2014). Computer-aided diagnosis from weak supervision: A benchmarking study. Computerized Medical Imaging and Graphics. 42 44-50

Technical Report (4.28 MB)

Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83

Technical Report (380.19 KB)

Menze, B H, Kelm, B Michael, Masuch, R, Himmelreich, U, Bachert, P, Petrich, W and Hamprecht, F A (2009). A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data. BMC Bioinformatics. 10:213

Technical Report (675 KB)

Weber, C, Zechmann, C M, Kelm, B Michael, Zamecnik, R, Hendricks, D, Waldherr, R, Hamprecht, F A, Delorme, S, Bachert, P and Ikinger, U (2007). Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer. Der Urologe. 46 1252

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. International Journal of Computer Vision. 115 155–184

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2014). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. CoRR. http://arxiv.org/abs/1404.0533

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. International Journal of Computer Vision. 115 155–184. http://hci.iwr.uni-heidelberg.de/opengm2/

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2014). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. CoRR. abs/1404.0533. http://hci.iwr.uni-heidelberg.de/opengm2/

Technical Report (3.32 MB)

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. International Journal of Computer Vision. 1-30

Technical Report (1.5 MB)

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. Int.~J.~Comp.~Vision

Technical Report (5.12 MB)

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. International Journal of Computer Vision. 115 155–184

Hamprecht, F A, Thiel, W and van Gunsteren, W F (2002). Chemical library subset selection algorithms: a unified derivation using spatial statistics. Journal of Chemical Information and Computer Sciences. 42 414-428

Hissmann, M and Hamprecht, F A (2005). Bayesian surface estimation for white light interferometry. Optical Engineering. 44 1-9

Technical Report (549.46 KB)

Zechmann, C M, Menze, B H, Kelm, B Michael, Zamecnik, P, Ikinger, U, Waldherr, R, Delorme, S, Hamprecht, F A and Bachert, P (2012). Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer. Academic Radiology. 19, 6 675-684

Kreshuk, A, Walecki, R, Köthe, U, Gierthmühlen, M, Plachta, D, Genoud, C, Haastert-Talini, K and Hamprecht, F A (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154

Mikut, R, Dickmeis, T, Driever, W, Geurts, P, Hamprecht, F A, Kausler, B X, Ledesma-Carbayo, M, Marée, R, Mikula, K, Pantazis, P, Ronneberger, O, Santos, A and Stotzka, R (2013). Automated Processing of Zebrafish Imaging Data: A Survey. Zebrafish. 10 (3)

Technical Report (1.73 MB)

Diego, F, Reichinnek, S, Both, M and Hamprecht, F A (2013). Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning. ISBI 2013. Proceedings. 1058-1061

Technical Report (2.82 MB)

Kelm, B Michael, Menze, B H, Zechmann, C M, Baudendistel, K T and Hamprecht, F A (2007). Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification. Magnetic Resonance in Medicine. 57 150-159

Technical Report (348.05 KB)

Kreshuk, A, Köthe, U, Pax, E, Bock, D D and Hamprecht, F A (2014). Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2

Technical Report (16.66 MB)

Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)

Technical Report (290.48 KB)

Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131

Technical Report (3.22 MB)

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