Publications
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Imagining the future of bioimage analysis. Nature Biotechnology. 34 1250-1255
Technical Report (924.57 KB)
(2016). 
Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539
Technical Report (2.25 MB)
(2015). 
Instance Label Prediction by Dirichlet Process Multiple Instance Learning. UAI. Proceedings
Technical Report (4.26 MB)
(2014). 
Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects. ISBI 2013.Proceedings. 656-659
Technical Report (711.68 KB)
(2013). 
K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384
Technical Report (1.18 MB)
(2013). 
The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models. ECCV 2012
Technical Report (532.64 KB)
(2012). 
The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12
Technical Report (446.28 KB)
(2012). 
The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102
Technical Report (625.06 KB)
(2010). 
Learned Watershed: End-to-End Learning of Seeded Segmentation. ICCV. 2030-2038
Technical Report (3.76 MB)
(2017). 
Learning Diverse Models: The Coulomb Structured Support Vector Machine. ECCV. Proceedings. Springer. LNCS 9907 585-599
Technical Report (2.54 MB)
(2016). 
Learning Multi-Level Sparse Representation. NIPS. Proceedings. http://papers.nips.cc/paper/5076-learning-multi-level-sparse-representations
Technical Report (2.79 MB)
(2013). 
Learning Multi-Level Sparse Representation for Identifying Neuronal Activity. Signal Processing with Adaptive Sparse Structured Representations Workshop (SPARS). Book of Abstracts
Technical Report (1.05 MB)
(2013). (2018). 
Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688
Technical Report (3.66 MB)
(2012). 
Learning to Segment Dense Cell Nuclei with Shape Prior. CVPR 2012. Proceedings. 1012-1018
Technical Report (2.66 MB)
(2012). 
Learning to Segment Neurons with Non-local Quality Measures. MICCAI 2013. Proceedings, part II. Springer. 8150 419-427
Technical Report (2.87 MB)
(2013). 
Learning to Segment: Training Hierarchical Segmentation under a Topological Loss. MICCAI. Proceedings, Part III. Springer. 9351 268-275
Technical Report (2.92 MB)
(2015). 
Learning-based Mitotic Cell Detection in Histopathological Images. ICPR 2012. Proceedings. 2306-2309
Technical Report (1.96 MB)
(2012). (2019). 
Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images. Bildverarbeitung für die Medizin. 31-36
Technical Report (672.84 KB)
(2006). (2017). 
Method for processing an intensity image of a microscope. Patent, Patent Number: WO2008034721A1
Technical Report (39.81 KB)
(2008). 
MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763
Technical Report (125.18 KB)
(2010). 
Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI. Magnetic Resonance in Medicine. 59 1457-1466
Technical Report (1.45 MB)
(2008). 
A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution. Helv. Chim. Acta. 85 618-632
(2002). Multicut brings automated neurite segmentation closer to human performance. Nature Methods. 14 101-102. http://rdcu.be/oVDQ
(2017). Multidimensionale Bildverarbeitung in der Produktion. QZ. 47 1154--1159. http://www.qz-online.de/qz-zeitschrift/archiv/artikel/multidimensionale-bildverarbeitung-in-der-produktion-fuer-anspruchsvolle-338129.html
(2002). Multi-modal Brain Tumor Segmentation using Deep Convolutional NeuralNetworks. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winningcontribution. 31-35
(2014). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2
Technical Report (481.58 KB)
(2010). 
Multiple instance learning with response-optimized random forests. ICPR. Proceedings. 3768 - 3773
Technical Report (296.66 KB)
(2014). 
Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy. Analytical and Bioanalytical Chemistry. 387 1801-1807
Technical Report (283.47 KB)
(2007). 
Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192
Technical Report (1.25 MB)
(2009). 
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV. Proceedings, in press
(2018). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639
Technical Report (511.23 KB)
(2009). (2017). 