Publications
2011
Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011).
ilastik: Interactive Learning and Segmentation Toolkit.
Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233
Menze, B H, Kelm, B Michael, Splitthoff, N, Köthe, U and Hamprecht, F A (2011).
On oblique random forests.
European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469
Technical Report (665.33 KB) Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011).
SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists.
Bioinformatics.
27 (7) 987-993
Technical Report (2.2 MB) Kelm, B Michael, Kaster, F O, Henning, A, Weber, M - A, Bachert, P, Bösinger, P, Hamprecht, F A and Menze, B H (2011).
Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images.
NMR in Biomedicine.
25(1) 1-13
Technical Report (1.94 MB) Pfannmöller, M, Flügge, H, Benner, G, Wacker, I, Sommer, C, Hanselmann, M, Schmale, S, Schmidt, H, Hamprecht, F A, Rabe, T, Kowalsky, W and Schröder, R (2011).
Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy.
Nano Letters.
11 3099-3107
2012
Andres, B, Köthe, U, Kröger, T, Helmstaedter, M, Briggmann, K L, Denk, W and Hamprecht, F A (2012).
3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries.
Medical Image Analysis.
16 (2012) 796-805
Technical Report (20.85 MB) Hanselmann, M, Röder, J, Köthe, U, Renard, B Y, Heeren, R M A and Hamprecht, F A (2012).
Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images.
Analytical Chemistry.
85 (1) 147-155
Technical Report (2.58 MB) Zechmann, C M, Menze, B H, Kelm, B Michael, Zamecnik, P, Ikinger, U, Waldherr, R, Delorme, S, Hamprecht, F A and Bachert, P (2012).
Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer.
Academic Radiology.
19, 6 675-684
Kausler, B X, Schiegg, M, Andres, B, Lindner, M, Köthe, U, Leitte, H, Wittbrodt, J, Hufnagel, L and Hamprecht, F A (2012).
A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness.
ECCV 2012. Proceedings.
7574 144-157
Technical Report (809.07 KB) Andres, B, Kröger, T, Briggmann, K L, Denk, W, Norogod, N, Knott, G W, Köthe, U and Hamprecht, F A (2012).
Globally Optimal Closed-Surface Segmentation for Connectomics.
ECCV 2012. Proceedings, Part 3. 778-791
Technical Report (2.72 MB) Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2012).
The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models.
Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}.
http://dx.doi.org/10.1007/978-3-642-33786-4_12 Technical Report (446.28 KB) Renard, B Y, Xu, B, Kirchner, M, Zickmann, F, Winter, D, Korten, S, Brattig, N, Tzur, A, Hamprecht, F A and Steen, H (2012).
Overcoming species boundaries in peptide identification with BICEPS.
Molecular and Cellular Proteomics.
11 Technical Report (444.6 KB) 2013
Mikut, R, Dickmeis, T, Driever, W, Geurts, P, Hamprecht, F A, Kausler, B X, Ledesma-Carbayo, M, Marée, R, Mikula, K, Pantazis, P, Ronneberger, O, Santos, A and Stotzka, R (2013).
Automated Processing of Zebrafish Imaging Data: A Survey.
Zebrafish.
10 (3) Technical Report (1.73 MB) Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Sungwoong, K, Kausler, B X, Lellmann, J, Komodakis, N and Rother, C (2013).
A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems.
CVPR 2013. Proceedings Technical Report (1.35 MB) Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Lellmann, J, Komodakis, N and Rother, C (2013).
A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problem.
CVPR Technical Report (1.35 MB) Pages
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