Publications

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Author Title [ Type(Desc)] Year
Journal Article
Trittler, S and Hamprecht, F A (2009). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639PDF icon Technical Report (511.23 KB)
Krasowki, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2017). Neuron Segmentation with High-Level Biological Priors. IEEE Transactions on Medical Imaging. 37
Renard, B Y, Kirchner, M, Steen, H, Steen, J A J and Hamprecht, F A (2008). NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355PDF icon Technical Report (643.89 KB)
Jähne, B and Schwarzbauer, M (2016). Noise equalisation and quasi loss-less image data compression – or how many bits needs an image sensor?. tm – Technisches Messen. 83 16–24
Zisler, M, Kappes, J H, Schnörr, C, Petra, S and Schnörr, C (2016). Non-Binary Discrete Tomography by Continuous Non-Convex Optimization. IEEE Comp. Imaging. 2 335-347
Schnörr, C and Sprengel, R (1994). A Nonlinear Regularization Approach to Early Vision. Biol. Cybernetics. 72 141–149
Restle, J, Hissmann, M and Hamprecht, F A (2004). Nonparametric Smoothing of Height maps using ``Confidence'' values. Optical Engineering. 43 866-871PDF icon Technical Report (1.07 MB)
Bell, P, Schlecht, J and Ommer, B (2013). Nonverbal Communication in Medieval Illustrations Revisited by Computer Vision and Art History. Visual Resources Journal, Special Issue on Digital Art History. Taylor & Francis. 29 26--37. http://www.tandfonline.com/doi/abs/10.1080/01973762.2013.761111
Jehle, M and Jähne, B (2008). A novel method for three-dimensional three-component analysis of flow close to free water surfaces. Exp. Fluids. 44 469--480
Ulman, V, Maška, M, Magnusson, K E G, Ronneberger, O, Haubold, C, Harder, N, Matula, P, Matula, P, Svoboda, D, Radojevic, M, Smal, I, Rohr, K, Jaldén, J, Blau, H M, Dzyubachyk, O, Lelieveldt, B, Xiao, P, Li, Y, Cho, S - Y, Dufour, A, Olivo-Marin, J C, Reyes-Aldasoro, C C, Solis-Lemus, J A, Bensch, R, Brox, T, Stegmaier, J, Mikut, R, Wolf, S, Hamprecht, F A, Esteves, T, Quelhas, P, Demirel, Ö, Malström, L, Jug, F, Tomančák, P, Meijering, E, Muñoz-Barrutia, A, Kozubek, M and Ortiz-de-Solorzano, C (2017). An Objective Comparison of Cell Tracking Algorithms. Nature Methods. 14 1141-1152PDF icon Technical Report (4.24 MB)
Kaster, F O, Merkel, B, Nix, O and Hamprecht, F A (2011). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Computer Science - Research and Development. 26 65-85PDF icon Technical Report (808.16 KB)
Jähne, (2015). The ocean in the lab: measurements with light and shadow. Ruperto Carola Forschungsmagazin Heidelberg University. 7 52–59
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). One plus one makes three (for social networks). PLoS ONE. 4,7
Andres, B, Beier, T and Kappes, J H (2012). OpenGM: A C++ Library for Discrete Graphical Models. ArXiv e-prints
Wenig, M, Jähne, B and Platt, U (2005). Operator representation as a new differential optical absorption spectroscopy formalism. Appl. Optics. 44 3246-3253
Garbe, C S, Roetmann, K, Beushausen, V and Jähne, B (2008). An optical flow MTV based technique for measuring microfluidic flow in the presence of diffusion and Taylor dispersion. Exp. Fluids. 44 439--450
Friedl, F, Krah, N and Jähne, B (2015). Optical sensing of oxygen using a modified Stern-Volmer equation for high laser irradiance. Sensors and Actuators B: Chemical. 206 336--342
Friedl, F, Krah, N and Jähne, B (2015). Optical sensing of oxygen using a modified Stern-Volmer equation for high laser irradiance. Sensors and Actuators B: Chemical. 206 336–342
Ruhnau, P and Schnörr, C (2007). Optical Stokes Flow Estimation: An Imaging-Based Control Approach. Exp.~in Fluids. 42 61--78PDF icon Technical Report (1.54 MB)
Ruhnau, P and Schnörr, C (2007). Optical Stokes Flow Estimation: An Imaging-Based Control Approach. Exp. in Fluids. 42 61–78
Jähne, (2012). Optik, Photonik und Bildverarbeitung --- eine spannende Reise. Optik & Photonik. 7 2--3
Menze, B H, Lichy, M P, Bachert, P, Kelm, B Michael, Schlemmer, H P and Hamprecht, F A (2006). Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor. NMR in Biomedicine. 19 599-609PDF icon Technical Report (289.77 KB)
Atif, M and Jähne, B (2013). Optimal Depth Estimation from a Single Image by Computational Imaging Using Chromatic Aberrations. tm --- Technisches Messen. 80 343--348
Jug, F, Pietzsch, T, Kainmüller, D, Funke, J, Kaiser, M, van Nimwegen, E, Rother, C and Myers, G (2014). Optimal joint segmentation and tracking of escherichia coli in the mother machine. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8677 25–36
Künsch, H R, Agrell, E and Hamprecht, F A (2005). Optimal lattices for sampling. IEEE Transactions on Information Theory. 51 634-647
Erz, M and Jähne, B (2011). Optimale Kameraauswahl für maschinelles Sehen durch standardisierte Charakterisierung. tm --- Technisches Messen. 78 377--383
Lellmann, J, Lenzen, F and Schnörr, C (2013). Optimality Bounds for a Variational Relaxation of the Image Partitioning Problem. Journal of Mathematical Imaging and Vision. 47 (3) 239-257
Lellmann, J, Lenzen, F and Schnörr, C (2012). Optimality Bounds for a Variational Relaxation of the Image Partitioning Problem. Journal of Mathematical Imaging and Vision. Springer. 47 239-257
Lellmann, J, Lenzen, F and Schnörr, C (2012). Optimality Bounds for a Variational Relaxation of the Image Partitioning Problem. Journal of Mathematical Imaging and Vision. Springer. 47 239-257PDF icon Technical Report (616.16 KB)
Lellmann, J, Lenzen, F and Schnörr, C (2010). Optimality Bounds for Variational Relaxations of Optimal Partition Problems
Rother, C, Kolmogorov, V, Lempitsky, V and Szummer, M (2007). Optimizing Binary MRFs via Extended Roof Duality Technical Report MSR-TR-2007-46. Computing. http://research.microsoft.com/vision/cambridge/
Wahl, A - S, Büchler, U, Brändli, A, Brattoli, B, Musall, S, Kasper, H, Ineichen, B V, Helmchen, F, Ommer, B and Schwab, M E (2017). Optogenetically stimulating the intact corticospinal tract post-stroke restores motor control through regionalized functional circuit formation. Nature Communications. (ASW & UB contributed equally; BO and MES contributed equally). https://www.nature.com/articles/s41467-017-01090-6
Meister, S, Jähne, B and Kondermann, D (2012). Outdoor Stereo Camera System for the Generation of Real-World Benchmark Data Sets. Optical Engineering. 51 021107-1
Meister, S, Jähne, B and Kondermann, D (2012). Outdoor stereo camera system for the generation of real-world benchmark data sets. Opt. Eng. 51 021107
Renard, B Y, Xu, B, Kirchner, M, Zickmann, F, Winter, D, Korten, S, Brattig, N, Tzur, A, Hamprecht, F A and Steen, H (2012). Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11PDF icon Technical Report (444.6 KB)

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