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Author Title [ Type(Asc)] Year
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PhD Thesis
C. Haubold, “Scalable Inference for Multi-Target Tracking on Proliferating Cells”. University of Heidelberg, 2017.
Journal Article
V. Ulman, Maška, M., Magnusson, K. E. G., Ronneberger, O., Haubold, C., Harder, N., Matula, P., Matula, P., Svoboda, D., Radojevic, M., Smal, I., Rohr, K., Jaldén, J., Blau, H. M., Dzyubachyk, O., Lelieveldt, B., Xiao, P., Li, Y., Cho, S. - Y., Dufour, A., Olivo-Marin, J. C., Reyes-Aldasoro, C. C., Solis-Lemus, J. A., Bensch, R., Brox, T., Stegmaier, J., Mikut, R., Wolf, S., Hamprecht, F. A., Esteves, T., Quelhas, P., Demirel, Ö., Malström, L., Jug, F., Tomančák, P., Meijering, E., Muñoz-Barrutia, A., Kozubek, M., and Ortiz-de-Solorzano, C., “An Objective Comparison of Cell Tracking Algorithms”, Nature Methods, vol. 14, no. 12, pp. 1141-1152, 2017.PDF icon Technical Report (4.24 MB)
S. Berg, Kutra, D., Kroeger, T., Straehle, C. N., Kausler, B. X., Haubold, C., Schiegg, M., Ales, J., Beier, T., Rudy, M., Eren, K., Cervantes, J. I., Xu, B., Beuttenmüller, F., Wolny, A., Zhang, C., Köthe, U., Hamprecht, F. A., and Kreshuk, A., “ilastik: interactive machine learning for (bio)image analysis”, Nature Methods, vol. 16, pp. 1226-1232, 2019.
M. Schiegg, Hanslovsky, P., Haubold, C., Köthe, U., Hufnagel, L., and Hamprecht, F. A., “Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell”, Bioinformatics, vol. 31, no. 6, pp. 948-956, 2015.PDF icon Technical Report (534.29 KB)
V. Uhlmann, Haubold, C., Hamprecht, F. A., and Unser, M., “Diverse Shortest Paths for Bioimage Analysis”, Bioinformatics, pp. 1-3, 2017.
Conference Proceedings
C. Haubold, Ales, J., Wolf, S., and Hamprecht, F. A., “A Generalized Successive Shortest Paths Solver for Tracking Dividing Targets”, ECCV. Proceedings, vol. LNCS 9911. Springer, pp. 566-582, 2016.PDF icon Technical Report (1.18 MB)
C. Haubold, Uhlmann, V., Unser, M., and Hamprecht, F. A., “Diverse M-best Solutions by Dynamic Programming”, GCPR. Proceedings, vol. LNCS 10496. Springer, pp. 255-267, 2017.
Conference Paper
A. Drory, Haubold, C., Avidan, S., and Hamprecht, F. A., “Semi-Global Matching: A Principled Derivation in Terms of Message Passing”, in GCPR. Proceedings, 2014, pp. 43-53.PDF icon Technical Report (2.6 MB)
M. Schiegg, Heuer, B., Haubold, C., Wolf, S., Köthe, U., and Hamprecht, F. A., “Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models”, in ISBI. Proceedings, 2015, pp. 394-398.PDF icon Technical Report (648.55 KB)
Book Chapter
C. Haubold, Schiegg, M., Kreshuk, A., Berg, S., Köthe, U., and Hamprecht, F. A., “Segmenting and Tracking Multiple Dividing Targets Using ilastik”, in Focus on Bio-Image Informatics, vol. 219, Springer, 2016, pp. 199-229.PDF icon Technical Report (4.46 MB)