Publications
A
Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011).
Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images.
PLoS ONE.
6 (10)
Technical Report (290.48 KB) Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Knott, G W and Hamprecht, F A (2011).
Automated Segmentation of Synapses in 3D EM Data.
Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).
Proceedings. 220-223
C
Maco, B, Holtmaat, A, Cantoni, M, Kreshuk, A, Straehle, C N, Hamprecht, F A and Knott, G W (2013).
Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons.
PloS one.
8 (2) Technical Report (2.13 MB) G
Andres, B, Kröger, T, Briggmann, K L, Denk, W, Norogod, N, Knott, G W, Köthe, U and Hamprecht, F A (2012).
Globally Optimal Closed-Surface Segmentation for Connectomics.
ECCV 2012. Proceedings, Part 3. 778-791
Technical Report (2.72 MB) I
Krasowski, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2015).
Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors.
12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539
Technical Report (2.25 MB) M
Beier, T, Pape, C, Rahaman, N, Prange, T, Berg, S, Bock, D, Cardona, A, Knott, G W, Plaza, S M, Scheffer, L K, Köthe, U, Kreshuk, A and Hamprecht, F A (2017).
Multicut brings automated neurite segmentation closer to human performance.
Nature Methods.
14 101-102.
http://rdcu.be/oVDQ N
Krasowki, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2017).
Neuron Segmentation with High-Level Biological Priors.
IEEE Transactions on Medical Imaging.
37 S
Maco, B, Cantoni, M, Holtmaat, A, Kreshuk, A, Hamprecht, F A and Knott, G W (2014).
Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites.
Nature Protocols.
9 1354-1366
Technical Report (2.01 MB)
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