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2022
Fita, E, Damrich, S and Hamprecht, F A (2022). The Algebraic Path Problem for Graph Metrics. 39th International Conference on Machine Learning, PMLR. Proceedings . 162 19178-19204
Damrich, S (2022). Discovering Structure without Labels. Heidelberg University
Garrido, Q, Damrich, S, Jäger, A, Cerletti, D, Claassen, M, Najman, L and Hamprecht, F A (2022). Visualizing hierarchies in scRNA-seq data using a density tree-biased autoencoder. Bioinformatics. arXiv preprint. 38 (Suppl 1) i316-i324
2021
Blattmann, A, Milbich, T, Dorkenwald, M and Ommer, B (2021). Behavior-Driven Synthesis of Human Dynamics. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). https://arxiv.org/abs/2103.04677
Fita, E, Damrich, S and Hamprecht, F A (2021). Directed Probabilistic Watershed. NeurIPS. Proceedings. 34PDF icon Technical Report (957.78 KB)
Blattmann, A, Milbich, T, Dorkenwald, M and Ommer, B (2021). iPOKE: Poking a Still Image for Controlled Stochastic Video Synthesis. Proceedings of the International Conference on Computer Vision (ICCV). https://arxiv.org/abs/2107.02790
Andersson, A, Diego, F, Hamprecht, F A and Wählby, C (2021). Istdeco: In Situ Transcriptomics Decoding By Deconvolution. bioRxiv
Afifi, M, Derpanis, K G, Ommer, B and Brown, M S (2021). Learning Multi-Scale Photo Exposure Correction. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). https://arxiv.org/abs/2003.11596
Walter, F C, Damrich, S and Hamprecht, F A (2021). MultiStar: Instance Segmentation of Overlapping Objects with Star-Convex Polygons. ISBI. 295-298PDF icon Technical Report (1.83 MB)
Arlt, H, Sui, X, Folger, B, Adams, C, Chen, X, Remme, R, Hamprecht, F A, DiMaio, F, Liao, M, Goodman, J M, Farese, R V and Walther, T C (2021). Seipin forms a flexible cage at lipid droplet formation sites. bioRxiv
Islam, M Amirul, Kowal, M, Esser, P, Jia, S, Ommer, B, Derpanis, K G and Bruce, N (2021). Shape or Texture: Understanding Discriminative Features in CNNs. International Conference on Learning Representations (ICLR)
Dorkenwald, M, Milbich, T, Blattmann, A, Rombach, R, Derpanis, K G and Ommer, B (2021). Stochastic Image-to-Video Synthesis usin cINNs. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)
Dorkenwald, M, Milbich, T, Blattmann, A, Rombach, R, Derpanis, K G and Ommer, B (2021). Stochastic Image-to-Video Synthesis usin cINNs. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)
Damrich, S and Hamprecht, F H (2021). UMAP does not reproduce high-dimensional similarities due to negative sampling. arXiv preprint
Damrich, S and Hamprecht, F A (2021). On UMAP's True Loss Function. NeurIPS. Proceedings. 34PDF icon Technical Report (1.87 MB)
Blattmann, A, Milbich, T, Dorkenwald, M and Ommer, B (2021). Understanding Object Dynamics for Interactive Image-to-Video Synthesis. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). https://arxiv.org/abs/2106.11303v1
Brattoli, B, Büchler, U, Dorkenwald, M, Reiser, P, Filli, L, Helmchen, F, Wahl, A - S and Ommer, B (2021). Unsupervised behaviour analysis and magnification (uBAM) using deep learning. Nature Machine Intelligence. https://rdcu.be/ch6pL
2020
Wolny, A, Cerrone, L, Vijayan, A, Tofanelli, R, Vilches-Barro, A, Louveaux, M, Wenzel, C, Strauss, S, Wilson-Sanchez, D, Lymbouridou, R, Steigleder, S S, Pape, C, Bailoni, A, Duran-Nebreda, S, Bassel, G W, Lohmann, J U, Tsiantis, M, Hamprecht, F A, Schneitz, K, Maizel, A and Kreshuk, A (2020). Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution. eLife. 9
Dencker, T, Klinkisch, P, Maul, S M and Ommer, B (2020). Deep learning of cuneiform sign detection with weak supervision using transliteration alignment. PLoS ONE. 15. https://hci.iwr.uni-heidelberg.de/compvis/projects/cuneiform
Mustikovela, S K, Jampani, V, De Mello, S, Liu, S, Iqbal, U, Rother, C and Kautz, J (2020). Self-Supervised Viewpoint Learning From Image Collections. CONSAC. https://github.com/NVlabs/SSVPDF icon PDF (8.77 MB)
Desana, M and Schnörr, C (2020). Sum-Product Graphical Models. Machine Learning. 109 135–173
Dorkenwald, M, Büchler, U and Ommer, B (2020). Unsupervised Magnification of Posture Deviations Across Subjects. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)PDF icon article.pdf (1.15 MB)
2019
Bendinger, A L, Debus, C, Glowa, C, Karger, C P, Peter, J and Storath, M (2019). Bolus arrival time estimation in dynamic contrast-enhanced magnetic resonance imaging of small animals based on spline models, in press. Physics in Medicine and Biology. 64
Kleesiek, J, Morshuis, J Nikolas, Isensee, F, Deike-Hofmann, K, Paech, D, Kickingereder, P, Köthe, U, Rother, C, Forsting, M, Wick, W, Bendszus, M, Schlemmer, H Peter and Radbruch, A (2019). Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study. Investigative Radiology. 54 653–660
Mackowiak, R, Lenz, P, Ghori, O, Diego, F, Lange, O and Rother, C (2019). CEREALS - Cost-Effective REgion-based Active Learning for Semantic Segmentation. British Machine Vision Conference 2018, BMVC 2018
Kirschbaum, E, Haußmann, M, Wolf, S, Sonntag, H, Schneider, J, Elzoheiry, S, Kann, O, Durstewitz, D and Hamprecht, F A (2019). LeMoNADe: Learned Motif and Neuronal Assembly Detection in calcium imaging videos. ICLR. Proceedings
Bengio, Y, Deleu, T, Rahaman, N, Ke, R, Lachapelle, S, Bilaniuk, O, Goyal, A and Pal, C (2019). A Meta-Transfer Objective for Learning to Disentangle Causal Mechanisms. arXiv preprint arXiv:1901.10912PDF icon Technical Report (871.59 KB)
E Sanmartin, F, Damrich, S and Hamprecht, F A (2019). Probabilistic Watershed: Sampling all spanning forests for seeded segmentation and semi-supervised learning. Advances in Neural Information Processing Systems
Desana, M and Schnörr, C (2019). Sum-Product Graphical Models. Machine Learning. https://doi.org/10.1007/s10994-019-05813-2
Esposito, M, Hennersperger, C, Göbl, R, Demaret, L, Storath, M, Navab, N, Baust, M and Weinmann, A (2019). Total variation regularization of pose signals with an application to 3D freehand ultrasound. IEEE Transactions on Medical Imaging. 38(10) 2245-2258
2018
Hodaň, T, Michel, F, Brachmann, E, Kehl, W, Buch, A Glent, Kraft, D, Drost, B, Vidal, J, Ihrke, S, Zabulis, X, Sahin, C, Manhardt, F, Tombari, F, Kim, T Kyun, Matas, J and Rother, C (2018). BOP: Benchmark for 6D object pose estimation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11214 LNCS 19–35. http://arxiv.org/abs/1808.08319
Draxler, F (2018). The Energy Landscape Of Deep Neural Networks. Heidelberg University
Draxler, F, Veschgini, K, Salmhofer, M and Hamprecht, F A (2018). Essentially No Barriers in Neural Network Energy Landscape. ICML. Proceedings. 80 1308--1317PDF icon Technical Report (685.93 KB)
Ghori, O, Mackowiak, R, Bautista, M, Beuter, N, Drumond, L, Diego, F and Ommer, B (2018). Learning to Forecast Pedestrian Intention from Pose Dynamics. Intelligent Vehicles, IEEE, 2018
Ghori, O, Mackowiak, R, Bautista, M, Beuter, N, Drumond, L, Diego, F and Ommer, B (2018). Learning to Forecast Pedestrian Intention from Pose Dynamics. Intelligent Vehicles, IEEE, 2018

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