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Conference Paper

A. Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Knott, G. W., and Hamprecht, F. A., “Automated Segmentation of Synapses in 3D EM Data”, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011). Proceedings, 2011, pp. 220-223.

S. Wanner, Sommer, C., Rocholz, R., Hamprecht, F. A., and Jähne, B., “A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface”, in 16th International Workshop on Vision, Modelling and Visualization, 2011, pp. 199-206.

Technical Report (4.67 MB)

S. Wanner, Sommer, C., Rocholz, R., Jung, M., Hamprecht, F. A., and Jähne, B., “A framework for interactive visualization and classification of dynamical processes at the water surface”, in 16th International Workshop on Vision, Modelling and Visualization, 2011, p. 199--206.

C. Sommer, Straehle, C. N., Köthe, U., and Hamprecht, F. A., “ilastik: Interactive Learning and Segmentation Toolkit”, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings, 2011, pp. 230-233.

M. Jehle, Sommer, C., and Jähne, B., “Learning of Optimal Illumination for Material Classification”, in Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, 2010, pp. 563-572.

M. Jehle, Sommer, C., and Jähne, B., “Learning of optimal illumination for material classification”, in Pattern Recognition, 2010, vol. 6376, p. 563--572.

Journal Article

A. Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Cantoni, M., Knott, G. W., and Hamprecht, F. A., “Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images”, PLoS ONE, vol. 6 (10), 2011.

Technical Report (290.48 KB)

K. Börner, Hermle, J., Sommer, C., Brown, N. P., Knapp, B., Glass, B., Torralba, G., Reymann, J., Beil, N., Beneke, J., Pepperkok, R., Schneider, R., and Ludwig, T., “From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication”, Biotechnology Journal, vol. 5, pp. 39-49, 2010.

Technical Report (556.09 KB)

C. Sommer, Fiaschi, L., Hamprecht, F. A., and Gerlich, D., “Learning-based Mitotic Cell Detection in Histopathological Images”, ICPR 2012. Proceedings, pp. 2306-2309, 2012.

Technical Report (1.96 MB)

M. Pfannmöller, Flügge, H., Benner, G., Wacker, I., Sommer, C., Hanselmann, M., Schmale, S., Schmidt, H., Hamprecht, F. A., Rabe, T., Kowalsky, W., and Schröder, R., “Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy”, Nano Letters, vol. 11, pp. 3099-3107, 2011.

PhD Thesis

C. Sommer, “Interactive Learning for the Analysis of Biomedical and Industrial Imagery”. University of Heidelberg, 2010.