ms2preproc: Computational Preprocessing of MS/MS Spectra
BY Renard, M Kirchner, F Monigatti, AR Invanov, J Rappsilber, D Winter, JAJ Steen, FA Hamprecht, H Steen

These are executables for Windows and Linux for our PROTEOMICS publication entitled 'When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification'. A description of the software is given in the readme file. It also contains an R-function to compute the the local false discovery rate based on the PSPEP approach (WH Tang, IV Shilov, SL Seymour. Nonlinear fitting method for determining local false discovery rates from decoy database searches. J Proteome Res. 2008 Sep;7(9):3661-7).