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In Collection
J. Tschiersch and Jähne, B., “Gas exchange trough a rough water surface in a circular windtunnel; wave characteristics under limited and unlimited fetch”, Berichte aus dem Sonderforschungsbereich 94 Meeresforschung - Symposium on Capillary Waves and Gas Exchange, Trier July 2--6, 1979. Univ. Hamburg, p. 63--70, 1980.
S. Wanner, Fehr, J., and Jähne, B., “Generating EPI representations of 4D light fields with a single lens focused plenoptic camera”, Advances in Visual Computing. Springer, p. 90--101, 2011.
R. Nair, Meister, S., Lambers, M., Balda, M., Hofmann, H., Kolb, A., Kondermann, D., and Jähne, B., “Ground truth for evaluating time of flight imaging”, Time-of-Flight and Depth Imaging. Sensors, Algorithms, and Applications, vol. 8200. Springer, p. 52--74, 2012.
D. Banerjee, Schabel, S., Garbe, C. S., Schimpf, U., Jähne, B., and von Spiegel, W., “High resolution optical measurement techniques in paper drying”, Inpaper International - 9-10, vol. 4. p. 16--22, 2005.
B. Jähne and Siegenthaler, U., “The influence of surface tension on gas exchange: measurements of gas exchange with alcohol/water mixtures in a circular wind-water tunnel”, Berichte aus dem Sonderforschungsbereich 94 Meeresforschung - Symposium on Capillary Waves and Gas Exchange, Trier July 2--6, 1979. Univ. Hamburg, p. 103--108, 1980.
J. F. Acker, Berkels, B., Bredies, K., Diallo, M. S., Droske, M., Garbe, C. S., Holschneider, M., Hron, J., Kondermann, C., Kulesh, M., Maass, P., Olischläger, N., and Peitgen, H. - O., “Inverse Problems and Parameter Identification in Image Processing”, Mathematical Methods in Time Series Analysis and Digital Image Processing. Springer, p. 111--151, 2008.
J. F. Acker, Berkels, B., Bredies, K., Diallo, M. S., Droske, M., Garbe, C. S., Holschneider, M., Hron, J., Kondermann, C., Kulesh, M., Maass, P., Olischläger, N., and Peitgen, H. - O., “Inverse Problems and Parameter Identification in Image Processing”, Mathematical Methods in Time Series Analysis and Digital Image Processing. Springer, p. 111--151, 2008.
B. Jähne and Münnich, K. O., “Momentum induced gas exchange through a smooth water surface, models and experimental results from linear and circular wind-water tunnels”, Berichte aus dem Sonderforschungsbereich 94 Meeresforschung - Symposium on Capillary Waves and Gas Exchange, Trier July 2--6, 1979. Univ. Hamburg, p. 55--62, 1980.
C. S. Garbe, Krajsek, K., Pavlov, P., Andres, B., Mühlich, M., Stuke, I., Mota, C., Böhme, M., Haker, M., Schuchert, T., Scharr, H., Aach, T., and Barth, E., “Nonlinear Analysis of Multi-Dimensional Signals”, Mathematical Methods in Signal Processing and Digital Image Analysis. Springer, pp. 231-288, 2008.PDF icon Technical Report (7.11 MB)
C. S. Garbe, Krajsek, K., Pavlov, P., Andres, B., Mühlich, M., Stuke, I., Mota, C., Böhme, M., Haker, M., Schuchert, T., Scharr, H., Aach, T., and Barth, E., “Nonlinear Analysis of Multi-Dimensional Signals”, Mathematical Methods in Signal Processing and Digital Image Analysis. Springer, pp. 231-288, 2008.PDF icon Technical Report (7.11 MB)
C. S. Garbe, Krajsek, K., Pavlov, P., Andres, B., Mühlich, M., Stuke, I., Mota, C., Böhme, M., Haker, M., Schucher, T., Scharr, H., Aach, T., and Barth, E., “Nonlinear analysis of multi-dimensional signals: local adaptive estimation of complex motion and orientation patterns”, Mathematical Methods in Time Series Analysis and Digital Image Processing. Springer, pp. 231-288, 2008.
C. S. Garbe, Krajsek, K., Pavlov, P., Andres, B., Mühlich, M., Stuke, I., Mota, C., Böhme, M., Haker, M., Schucher, T., Scharr, H., Aach, T., and Barth, E., “Nonlinear analysis of multi-dimensional signals: local adaptive estimation of complex motion and orientation patterns”, Mathematical Methods in Time Series Analysis and Digital Image Processing. Springer, pp. 231-288, 2008.
N. E. Huang, Toba, Y., Shen, Z., Klinke, J., Jähne, B., and Banner, M. L., “Ocean wave spectra and integral properties”, Wind Stress over the Ocean. Cambridge University Press, p. 82--123, 2001.
F. Becker, Petra, S., and Schnörr, C., “Optical Flow”, Handbook of Mathematical Methods in Imaging. Springer, 2014.
P. S. Liss, Watson, A. J., Bock, E. J., Jähne, B., Asher, W. E., Frew, N. M., Hasse, L., Korenowski, G. M., Merlivat, L., Phillips, L. F., Schlüssel, P., and Woolf, D. K., “Report Group 1 - Physical processes in the microlayer and the air-sea exchange of trace gases”, The Sea Surface and Global Change. Cambridge University Press, p. 1--33, 1997.
M. Bergtholdt and Schnörr, C., “Shape Priors and Online Appearance Learning for Variational Segmentation and Object Recognition in Static Scenes”, Pattern Recognition, Proc. 27th DAGM Symposium, vol. 3663. Springer, pp. 342–350, 2005.
M. Bergtholdt, Cremers, D., and Schnörr, C., “Variational Segmentation with Shape Priors”, Handbook of Mathematical Models in Computer Vision. Springer, pp. 147-160, 2005.
A. Berthe, Kondermann, D., Jähne, B., and Ketzscher, U., “The wall PIV measurement technique for near wall flow fields in biofliud mechanics”, Imaging Measurement Methods for Flow Analysis, Results of the DFG Priority Programme 1147 Imaging Measurement Methods for Flow Analysis 2003-2009, vol. 106. Springer, p. 11--20, 2009.
B. Jähne, Balschbach, G., and Fuß, D., “Wellenbewegte Wasseroberfläche”, Nahbereichsphotogrammetrie in der Praxis, Beispiele und Problemlösungen. Wichmann, p. 259--262, 2002.
inproceedings
C. Pape, Beier, T., Li, P., Jain, V., Brock, D. D., and Kreshuk, A., “Solving Large Multicut Problems for Connectomics via Domain Decomposition”, Bioimage Computing Workshop. ICCV. pp. 1-10, 2017.
C. Pape, Beier, T., Li, P., Jain, V., Brock, D. D., and Kreshuk, A., “Solving Large Multicut Problems for Connectomics via Domain Decomposition”, Bioimage Computing Workshop. ICCV. pp. 1-10, 2017.
Journal Article
B. Andres, Köthe, U., Kröger, T., Helmstaedter, M., Briggmann, K. L., Denk, W., and Hamprecht, F. A., “3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries”, Medical Image Analysis, vol. 16 (2012), pp. 796-805, 2012.PDF icon Technical Report (20.85 MB)
A. Wolny, Cerrone, L., Vijayan, A., Tofanelli, R., Vilches-Barro, A., Louveaux, M., Wenzel, C., Strauss, S., Wilson-Sanchez, D., Lymbouridou, R., Steigleder, S. S., Pape, C., Bailoni, A., Duran-Nebreda, S., Bassel, G. W., Lohmann, J. U., Tsiantis, M., Hamprecht, F. A., Schneitz, K., Maizel, A., and Kreshuk, A., “Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution”, eLife, vol. 9, 2020.
A. Wolny, Cerrone, L., Vijayan, A., Tofanelli, R., Vilches-Barro, A., Louveaux, M., Wenzel, C., Strauss, S., Wilson-Sanchez, D., Lymbouridou, R., Steigleder, S. S., Pape, C., Bailoni, A., Duran-Nebreda, S., Bassel, G. W., Lohmann, J. U., Tsiantis, M., Hamprecht, F. A., Schneitz, K., Maizel, A., and Kreshuk, A., “Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution”, eLife, vol. 9, 2020.
D. Banerjee, Garbe, C. S., Schimpf, U., Jähne, B., and Schabel, S., “An active thermographic technique for highly resolved heat transport measurements in paper drying”, APPITA Journal, vol. 61, p. 244--249, 2008.
N. Krah, Testa, M., Brons, S., Jäkel, O., Parodi, K., Voss, B., and Rinaldi, I., “An advanced image processing method to improve the spatial resolution of ion radiographies”, Physics in Medicine and Biology, vol. 60, p. 8525, 2015.
N. M. Frew, Bock, E. J., Schimpf, U., Hara, T., Haußecker, H., Edson, J. B., McGilles, W. R., Nelson, R. K., McKenna, S. P., Uz, B. M., and Jähne, B., “Air-sea gas transfer: Its dependence on wind stress, small-scale roughness, and surface films”, J. Geophys. Res., vol. 109, p. C08S17, 2004.
M. Hayn, Beirle, S., Hamprecht, F. A., Platt, U., Menze, B. H., and Wagner, T., “Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model”, Atmospheric Chemistry and Physics, vol. 9, pp. 9367-9398, 2009.PDF icon Technical Report (2.52 MB)
N. Gianniotis, Schnörr, C., Molkenthin, C., and Bora, S. S., “Approximate variational inference based on a finite sample of Gaussian latent variables”, Patt.~Anal.~Appl., 2015.PDF icon Technical Report (1.4 MB)
D. Sitenko, Boll, B., and Schnörr, C., “Assignment Flow For Order-Constrained OCT Segmentation”, Int J Computer Vision, vol. 129, 2021.
A. Kreshuk, Köthe, U., Pax, E., Bock, D. D., and Hamprecht, F. A., “Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks”, PLoS ONE, vol. 9, p. 2, 2014.PDF icon Technical Report (16.66 MB)
B. Michael Kelm, Menze, B. H., Zechmann, C. M., Baudendistel, K. T., and Hamprecht, F. A., “Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification”, Magnetic Resonance in Medicine, vol. 57, pp. 150-159, 2007.PDF icon Technical Report (348.05 KB)
F. Diego, Reichinnek, S., Both, M., and Hamprecht, F. A., “Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning”, ISBI 2013. Proceedings, pp. 1058-1061, 2013.PDF icon Technical Report (2.82 MB)
C. M. Zechmann, Menze, B. H., Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Delorme, S., Hamprecht, F. A., and Bachert, P., “Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer”, Academic Radiology, vol. 19, 6, pp. 675-684, 2012.
B. Voss, Stapf, J., Berthe, A., and Garbe, C. S., “Bichromatic Particle Streak Velocimetry bPSV -- Interfacial, v3C3D velocimetry using a single camera”, Exp. Fluids, 2012.

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