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Conference Proceedings

E. Fita, Damrich, S., and Hamprecht, F. A., “The Algebraic Path Problem for Graph Metrics”, 39th International Conference on Machine Learning, PMLR. Proceedings , vol. 162. pp. 19178-19204, 2022.

S. Wolf, Hamprecht, F. A., and Funke, J., “Inpainting Networks Learn to Separate Cells in Microscopy Images”, BMCV. 2020.

Technical Report (357.23 KB)

A. Bailoni, Pape, C., Wolf, S., Kreshuk, A., and Hamprecht, F. A., “Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks”, GCPR, vol. 12544. Springer, pp. 331-344, 2020.

S. Wolf, Li, Y., Pape, C., Bailoni, A., Kreshuk, A., and Hamprecht, F. A., “The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation”, ECCV. Proceedings. pp. 208-224, 2020.

Journal Article

C. Pape, Remme, R., Wolny, A., Olberg, S., Wolf, S., Cerrone, L., Cortese, M., Klaus, S., Lucic, B., Ullrich, S., Anders-Össwein, M., Wolf, S., Cerikan, B., Neufeldt, C. J., Ganter, M., Schnitzler, P., Merle, U., Lusic, M., Boulant, S., Stanifer, M., Bartenschlager, R., Hamprecht, F. A., Kreshuk, A., Tischer, C., Kräusslich, H. - G., Müller, B., and Laketa, V., “Microscopy-based assay for semi-quantitative detection of SARS-CoV-2 specific antibodies in human sera”, BioEssays, vol. 43, no. 3, 2021.

Q. Garrido, Damrich, S., Jäger, A., Cerletti, D., Claassen, M., Najman, L., and Hamprecht, F. A., “Visualizing hierarchies in scRNA-seq data using a density tree-biased autoencoder”, Bioinformatics, vol. 38 (Suppl 1), pp. i316-i324, 2022.

Techreport

A. Andersson, Diego, F., Hamprecht, F. A., and Wählby, C., “ISTDECO: In Situ Transcriptomics Decoding by Deconvolution”, bioRxiv, 2021.