Publications

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A
Wolny, A, Cerrone, L, Vijayan, A, Tofanelli, R, Vilches-Barro, A, Louveaux, M, Wenzel, C, Strauss, S, Wilson-Sanchez, D, Lymbouridou, R, Steigleder, S S, Pape, C, Bailoni, A, Duran-Nebreda, S, Bassel, G W, Lohmann, J U, Tsiantis, M, Hamprecht, F A, Schneitz, K, Maizel, A and Kreshuk, A (2020). Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution. eLife. 9
Jähne, (2019). Air-Sea Gas Exchange. Encyclopedia of Ocean Sciences. Academic Press. 6 1–13
Schnörr, C, Niemann, H and Kopecz, J (1993). Architekturkonzepte zur Bildauswertung. Grundlagen und Anwendungen der Künstlichen Intelligenz, 17. Fachtagung für Künstliche Intelligenz. Springer-Verlag, Berlin. 268–274
Wahl, A - S, Omlor, W, Rubio, J C, Chen, J L, Zheng, H, Schröter, A, Gullo, M, Weinmann, O, Kobayashi, K, Helmchen, F, Ommer, B and Schwab, M E (2014). Asynchronous Therapy Restores Motor Control by Rewiring of the Rat Corticospinal Tract after Stroke. Science. American Association for The Advancement of Science. 344 1250--1255. http://www.sciencemag.org/content/344/6189/1250
Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)PDF icon Technical Report (290.48 KB)
B
Kolmogorov, V, Criminisi, A, Blake, A, Cross, G and Rother, C (2005). Bi-layer segmentation of binocular stereo video. Proceedings - 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, CVPR 2005. II 407–414. http://research.microsoft.com/vision/cambridge
Kolmogorov, V, Criminisi, A, Blake, A, Cross, G and Rother, C (2005). Bi-layer segmentation of binocular stereo video. Proceedings - 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, CVPR 2005. II 407–414. http://research.microsoft.com/vision/cambridge
Keuchel, J, Schnörr, C, Schellewald, C and Cremers, D (2003). Binary Partitioning, Perceptual Grouping, and Restoration with Semidefinite Programming. 25 1364–1379
Scholes, M C, Matrai, P A, Andreae, M O, Smith, K A, Manning, M R, Artaxo, P, Barrie, L A, Bates, T S, Butler, J H, Ciccioli, P, Cieslik, S A, Delmas, R J and Dentener, F J (2003). Biosphere-Atmosphere Interactions. Atmospheric Chemistry in a Changing World, An Integration and Synthesis of a Decade of Tropospheric Chemistry Research. Springer. 19--71
Scholes, M C, Matrai, P A, Andreae, M O, Smith, K A, Manning, M R, Artaxo, P, Barrie, L A, Bates, T S, Butler, J H, Ciccioli, P, Cieslik, S A, Delmas, R J and Dentener, F J (2003). Biosphere-Atmosphere Interactions. Atmospheric Chemistry in a Changing World, An Integration and Synthesis of a Decade of Tropospheric Chemistry Research. Springer. 19--71
C
Carlsohn, M F, Menze, B H, Kelm, B Michael, Hamprecht, F A, Kercek, A, Leitner, R and Polder, G (2006). Color image processing. CRC Press. 7(17) 393-419
Kaster, F O, Weber, M - A and Hamprecht, F A (2011). Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. LNCS. Springer, Heidelberg. LNCS 6533 74-85PDF icon Technical Report (544.56 KB)
Snoeij, P, van Halsema, D, Oost, W A, Calkoen, C J, Vogelzang, J and Jähne, B (1991). Comparison of microwave backscatter measurements and small-scale surface wave measurements made from the Dutch ocean research tower 'Noordwijk'. Proceedings IGARSS '91. 3 1289--1292
van Halsema, D, Calkoen, C J, Oost, W A, Snoeij, P, Vogelzang, J and Jähne, B (1992). Comparisons of backscattering calculations with measurements made in a large wind/wave flume. Proc. IGARSS'92. 2 1451--1453
van Halsema, D, Calkoen, C J, Oost, W A, Snoeij, P and Jähne, B (1989). Comparisons of X-band Radar Backscatter Measurements with Area extended wave slop measurements made in a large Wind/Wave Tank. Proc. IGARSS'89. 5 2997--3001
Keränen, S V E, DePace, A, Hendriks, C L Luengo, Fowlkes, C, Arbelaez, P, Ommer, B, Brox, T, Henriquez, C, Wunderlich, Z, Eckenrode, K, Fischer, B, Hammonds, A and Celniker, S E (2009). Computational Analysis of Quantitative Changes in Gene Expression and Embryo Morphology between Species. Evolution-The Molecular Landscape
Keuchel, J, Schellewald, C, Cremers, D and Schnörr, C (2001). Convex Relaxations for Binary Image Partitioning and Perceptual Grouping. Mustererkennung 2001. Springer, Munich, Germany. 2191 353–360
Maco, B, Holtmaat, A, Cantoni, M, Kreshuk, A, Straehle, C N, Hamprecht, F A and Knott, G W (2013). Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PloS one. 8 (2)PDF icon Technical Report (2.13 MB)
D
Cerrone, L (2018). Deep End-To-End Learning Of A Diffusion Process For Seeded Image Segmentation. Heidelberg University
Zheng, S, Cheng, M Ming, Warrell, J, Sturgess, P, Vineet, V, Rother, C and Torr, P H S (2014). Dense semantic image segmentation with objects and attributes. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 3214–3221. http://www.robots.ox.ac.uk/˜tvg/http://tu-dresden.de/inf/cvld
Schlecht, J, Carque, B and Ommer, B (2011). Detecting Gestures in Medieval Images. Proceedings of the International Conference on Image Processing. IEEE. 1309--1312PDF icon Technical Report (1.61 MB)
Hamprecht, F A, Cohen, A J, Tozer, D J and Handy, N C (1998). Development and assessment of new exchange-correlation functionals. Journal of Chemical Physics. 109 6264-6271
Cremers, D, Tischhäuser, F, Weickert, J and Schnörr, C (2002). Diffusion Snakes: Introducing Statistical Shape Knowledge into the Mumford–Shah functional. Int. J. Computer Vision. 50 295–313
Cremers, D, Schnörr, C, Weickert, J and Schellewald, C (2000). Diffusion Snakes Using Statistical Shape Knowledge. Proc. Algebraic Frames for the Perception-Action Cycle. Springer, Kiel. 1888 164–174
Cremers, D, Schnörr, C and Weickert, J (2001). Diffusion–Snakes: Combining Statistical Shape Knowledge and Image Information in a Variational Framework. IEEE First Workshop on Variational and Level Set Methods in Computer Vision. IEEE Comp. Soc., Vancouver, Canada. 237–244
Vijayan, A, Tofanelli, R, Strauss, S, Cerrone, L, Wolny, A, Strohmeier, J, Kreshuk, A, Hamprecht, F A, Smith, R S and Schneitz, K (2021). A Digital 3D Reference Atlas Reveals Cellular Growth Patterns Shaping the Arabidopsis Ovule. eLife
Milbich, T, Roth, K, Bharadhwaj, H, Sinha, S, Bengio, Y, Ommer, B and Cohen, J Paul (2020). DiVA: Diverse Visual Feature Aggregation for Deep Metric Learning. IEEE European Conference on Computer Vision (ECCV). https://arxiv.org/abs/2004.13458
Snoeij, P, Calkoen, C J, Oost, W A, van Halsema, D, Vogelzang, J and Jähne, B (1990). Dual-polarized scatterometer measurements of generated Wind and Gravity Wave in a Very Large Wind/Wave Tank. Proc. IGARSS'90. 2157--2160
van Halsema, D, Calkoen, C J, Oost, W A, Snoeij, P, Vogelzang, J and Jähne, B (1991). Dual-polarized scatterometer measurements of wind and mechanically generated waves in a very large wind/wave flume, the VIERS-1 project. Proc.\ 5th Int. Coll. Physical Measurements and Signatures in Remote Sensing, Courchevel, France. ESA SP-319 247--252

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