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2021
Pape, C, Remme, R, Wolny, A, Olberg, S, Wolf, S, Cerrone, L, Cortese, M, Klaus, S, Lucic, B, Ullrich, S, Anders-Össwein, M, Wolf, S, Cerikan, B, Neufeldt, C J, Ganter, M, Schnitzler, P, Merle, U, Lusic, M, Boulant, S, Stanifer, M, Bartenschlager, R, Hamprecht, F A, Kreshuk, A, Tischer, C, Kräusslich, H - G, Müller, B and Laketa, V (2021). Microscopy-based assay for semi-quantitative detection of SARS-CoV-2 specific antibodies in human sera. BioEssays. 43
Pape, C (2021). Scalable Instance Segmentation for Microscopy. Heidelberg University
Bellagente, M, Haußmann, M, Luchmann, M and Plehn, T (2021). Understanding Event-Generation Networks via Uncertainties. arXiv preprint. https://arxiv.org/abs/2104.04543v1
2020
Wolny, A, Cerrone, L, Vijayan, A, Tofanelli, R, Vilches-Barro, A, Louveaux, M, Wenzel, C, Strauss, S, Wilson-Sanchez, D, Lymbouridou, R, Steigleder, S S, Pape, C, Bailoni, A, Duran-Nebreda, S, Bassel, G W, Lohmann, J U, Tsiantis, M, Hamprecht, F A, Schneitz, K, Maizel, A and Kreshuk, A (2020). Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution. eLife. 9
Bollweg, S, Haußmann, M, Kasieczka, G, Luchmann, M, Plehn, T and Thompson, J (2020). Deep-Learning Jets with Uncertainties and More. SciPost Phys. 8. https://scipost.org/10.21468/SciPostPhys.8.1.006PDF icon Technical Report (1.65 MB)
Zeilmann, A, Savarino, F, Petra, S and Schnörr, C (2020). Geometric Numerical Integration of the Assignment Flow. Inverse Problems. 36 034004 (33pp)
Wolf, S, Bailoni, A, Pape, C, Rahaman, N, Kreshuk, A, Köthe, U and Hamprecht, F A (2020). The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning. IEEE Transactions on Pattern Analysis and Machine Intelligence. 43 3724-3738PDF icon Technical Report (2.58 MB)
Haller, S, Prakash, M, Hutschenreiter, L, Pietzsch, T, Rother, C, Jug, F, Swoboda, P and Savchynskyy, B (2020). A Primal-Dual Solver for Large-Scale Tracking-by-Assignment. AISTATS 2020PDF icon PDF (1.04 MB)
Haller, S, Prakash, M, Hutschenreiter, L, Pietzsch, T, Rother, C, Jug, F, Swoboda, P and Savchynskyy, B (2020). A Primal-Dual Solver for Large-Scale Tracking-by-Assignment. AISTATS 2020PDF icon PDF (1.04 MB)
Bailoni, A, Pape, C, Wolf, S, Kreshuk, A and Hamprecht, F A (2020). Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. GCPR. Springer. 12544 331-344
Wolf, S, Li, Y, Pape, C, Bailoni, A, Kreshuk, A and Hamprecht, F A (2020). The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. ECCV. Proceedings. 208-224
Censor, Y, Petra, S and Schnörr, C (2020). Superiorization vs. Accelerated Convex Optimization: The Superiorized/Regularized Least Squares Case. J. Appl. Numer. Optimization (in press; arXiv:1911.05498). 2 15-62. http://jano.biemdas.com/archives/1060
Zern, A, Zisler, M, Petra, S and Schnörr, C (2020). Unsupervised Assignment Flow: Label Learning on Feature Manifolds by Spatially Regularized Geometric Assignment. Journal of Mathematical Imaging and Vision. https://doi.org/10.1007/s10851-019-00935-7
2019
Bendinger, A L, Debus, C, Glowa, C, Karger, C P, Peter, J and Storath, M (2019). Bolus arrival time estimation in dynamic contrast-enhanced magnetic resonance imaging of small animals based on spline models, in press. Physics in Medicine and Biology. 64
Kleesiek, J, Morshuis, J Nikolas, Isensee, F, Deike-Hofmann, K, Paech, D, Kickingereder, P, Köthe, U, Rother, C, Forsting, M, Wick, W, Bendszus, M, Schlemmer, H Peter and Radbruch, A (2019). Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study. Investigative Radiology. 54 653–660
Papst, M (2019). Development Of A Method For Quantitative Imaging Of Air-Water Gas Exchange. Institut für Umweltphysik, Universität Heidelberg, Germany
Zeilmann, A, Savarino, F, Petra, S and Schnörr, C (2019). Geometric Numerical Integration of the Assignment Flow. Inverse Problems. https://doi.org/10.1088/1361-6420/ab2772
Hosseini Jafari, O, Mustikovela, S Karthik, Pertsch, K, Brachmann, E and Rother, C (2019). iPose: Instance-Aware 6D Pose Estimation of Partly Occluded Objects. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11363 LNCS 477–492
Hühnerbein, R, Savarino, F, Petra, S and Schnörr, C (2019). Learning Adaptive Regularization for Image Labeling Using Geometric Assignment. Proc. SSVM. Springer
Hühnerbein, R, Savarino, F, Petra, S and Schnörr, C (2019). Learning Adaptive Regularization for Image Labeling Using Geometric Assignment. preprint: arXiv. https://arxiv.org/abs/1910.09976
Peter, S (2019). Machine learning under test-time budget constraints. Heidelberg University
Bengio, Y, Deleu, T, Rahaman, N, Ke, R, Lachapelle, S, Bilaniuk, O, Goyal, A and Pal, C (2019). A Meta-Transfer Objective for Learning to Disentangle Causal Mechanisms. arXiv preprint arXiv:1901.10912PDF icon Technical Report (871.59 KB)
Zisler, M, Zern, A, Petra, S and Schnörr, C (2019). Self-Assignment Flows for Unsupervised Data Labeling on Graphs. preprint: arXiv. https://arxiv.org/abs/1911.03472
Censor, Y, Petra, S and Schnörr, C (2019). Superiorization vs. Accelerated Convex Optimization: The Superiorized/Regularized Least Squares Case. preprint: arXiv. https://arxiv.org/abs/1911.05498
Zern, A, Zisler, M, Petra, S and Schnörr, C (2019). Unsupervised Assignment Flow: Label Learning on Feature Manifolds by Spatially Regularized Geometric Assignment. preprint: arXiv. https://arxiv.org/abs/1904.10863
Zisler, M, Zern, A, Petra, S and Schnörr, C (2019). Unsupervised Labeling by Geometric and Spatially Regularized Self-Assignment. Proc. SSVM. Springer
Pandey, N (2019). Weakly Supervised Semantic Segmentation. Heidelberg University
2018
Zeilmann, A, Savarino, F, Petra, S and Schnörr, C (2018). Geometric Numerical Integration of the Assignment Flow. preprint: arXiv. https://arxiv.org/abs/1810.06970
Hosseini Jafari, O, Mustikovela, S K, Pertsch, K, Brachmann, E and Rother, C (2018). iPose: Instance-Aware 6D Pose Estimation of Partly Occluded Objects. ACCV. Proceedings, in pressPDF icon Technical Report (3.28 MB)
Wolf, S, Pape, C, Bailoni, A, Rahaman, N, Kreshuk, A, Köthe, U and Hamprecht, F A (2018). The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11208 LNCS 571–587. http://arxiv.org/abs/1904.12654
Wolf, S, Pape, C, Bailoni, A, Rahaman, N, Kreshuk, A, Köthe, U and Hamprecht, F A (2018). The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV. Proceedings. Springer. 571-587
Zern, A, Zisler, M, Aström, F, Petra, S and Schnörr, C (2018). Unsupervised Label Learning on Manifolds by Spatially Regularized Geometric Assignment. GCPR. Proceedings. 698-713PDF icon Technical Report (5.23 MB)
Zern, A, Zisler, M, Aström, F, Petra, S and Schnörr, C (2018). Unsupervised Label Learning on Manifolds by Spatially Regularized Geometric Assignment. GCPR
2017
Dalitz, R, Petra, S and Schnörr, C (2017). Compressed Motion Sensing. Proc. SSVM. Springer. 10302
Peter, S, Diego, F, Hamprecht, F A and Nadler, B (2017). Cost-efficient Gradient Boosting. NIPS, poster

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