Publications

2019

Hanslovsky, P (2019). Isotropic Reconstruction of Neural Morphology from Large Non-Isotropic 3D Electron MIcroscopy. Heidelberg University
Kirschbaum, E, Haußmann, M, Wolf, S, Sonntag, H, Schneider, J, Elzoheiry, S, Kann, O, Durstewitz, D and Hamprecht, F A (2019). LeMoNADe: Learned Motif and Neuronal Assembly Detection in calcium imaging videos. ICLR. Proceedings
Peter, S (2019). Machine learning under test-time budget constraints. Heidelberg University
Ravindran, A (2019). Novel Deep Learning-Based Instance Segmentation Using Mutex Watershed For Microscopy Cell Images. Heidelberg University
Kirschbaum, E (2019). Novel Machine Learning Approaches for Neurophysiological Data Analysis. Heidelberg University
Snajder, R (2019). Pipeline Für Die Automatisierte Objektsegmentierung Von 3D Lightshet Mikroskopiebildern. Heidelberg University
E Sanmartin, F, Damrich, S and Hamprecht, F A (2019). Probabilistic Watershed: Sampling all spanning forests for seeded segmentation and semi-supervised learning. Advances in Neural Information Processing Systems
Li, J (2019). Robust Single Object Tracking Via Fully Convolutional Siamese Networks. Heidelberg University
Haußmann, M, Hamprecht, F A and Kandemir, M (2019). Sampling-Free Variational Inference of Bayesian Neural Networks by Variance Backpropagation. UAI. Proceedings. 563-573PDF icon Technical Report (1.04 MB)
Li, Y (2019). Semantic Instance Segmentation With The Multiway Mutex Watershed. Heidelberg University
Fita, E (2019). Semi-Supervised Distance-Based Segmentation. Heidelberg University
Storath, M, Kiefer, L and Weinmann, A (2019). Smoothing for signals with discontinuities using higher order Mumford-Shah models. Numerische Mathematik. 143(2) 423-460PDF icon Technical Report (1.09 MB)
Großkinsky, (2019). Synaptic Cleft Prediction On Electron Microsope Images. Heidelberg University
Esposito, M, Hennersperger, C, Göbl, R, Demaret, L, Storath, M, Navab, N, Baust, M and Weinmann, A (2019). Total variation regularization of pose signals with an application to 3D freehand ultrasound. IEEE Transactions on Medical Imaging. 38(10) 2245-2258
Xiao, S (2019). Tracking Dividing Cells Using Spatio-Temporal Embeddings. Heidelberg University
Pandey, N (2019). Weakly Supervised Semantic Segmentation. Heidelberg University

2018

Cerrone, L (2018). Deep End-To-End Learning Of A Diffusion Process For Seeded Image Segmentation. Heidelberg University
Weilbach, C (2018). Dictionary Learning With Bayesian Gans For Few-Shot Classification. Heidelberg University
Hehn, T and Hamprecht, F A (2018). End-to-end Learning of Deterministic Decision Trees. German Conference on Pattern Recognition. Proceedings. Springer. LNCS 11269 612-627PDF icon Technical Report (1.4 MB)
Draxler, F, Veschgini, K, Salmhofer, M and Hamprecht, F A (2018). Essentially No Barriers in Neural Network Energy Landscape. ICML. Proceedings. 80 1308--1317PDF icon Technical Report (685.93 KB)
Storath, M and Weinmann, A (2018). Fast median filtering for phase or orientation data. IEEE Transactions on Pattern Analysis and Machine Intelligence. 40 639–652PDF icon Technical Report (7.32 MB)
Fortun, D, Storath, M, Rickert, D, Weinmann, A and Unser, M (2018). Fast Piecewise-Affine Motion Estimation Without Segmentation. IEEE Transactions on Image Processing. 27 5612 - 5624
Schimmel, F (2018). Learnability Of Approximated Graph Cut Segmentation. Heidelberg University
Weiler, M, Hamprecht, F A and Storath, M (2018). Learning Steerable Filters for Rotation Equivariant CNNs. CVPR. Proceedings. 849-858PDF icon Technical Report (1.35 MB)
Erb, W, Weinmann, A, Ahlborg, M, Brandt, C, Bringout, G, Buzug, T M, Frikel, J, Kaethner, C, Knopp, T, März, T, Möddel, M, Storath, M and Weber, A (2018). Mathematical Analysis of the 1D Model and Reconstruction Schemes for Magnetic Particle Imaging. Inverse Problems. 34
Kiechle, M, Storath, M, Weinmann, A and Kleinsteuber, M (2018). Model-based learning of local image features for unsupervised texture segmentation. IEEE Transactions on Image Processing. 27 1994-2007
Beier, T (2018). Multicut Algorithms for Neurite Segmentation. Heidelberg University
Rahaman, N, Arpit, D, Baratin, A, Draxler, F, Lin, M, Hamprecht, F A, Bengio, Y and Courville, A (2018). On the spectral bias of deep neural networks. arXiv preprint arXiv:1806.08734
Kawetzki, D (2018). Semantic Segmentation Of Urban Scenes Using Deep Learning. Heidelberg University
Draxler, F (2018). The Energy Landscape Of Deep Neural Networks. Heidelberg University
Wolf, S, Pape, C, Bailoni, A, Rahaman, N, Kreshuk, A, Köthe, U and Hamprecht, F A (2018). The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV. Proceedings. Springer. 571-587
Bredies, K, Holler, M, Storath, M and Weinmann, A (2018). Total Generalized Variation for Manifold-valued Data. SIAM Journal on Imaging Sciences. 11 1785 - 1848

2017

Hehn, T (2017). A Probabilistic Approach To Learn Complex Differentiable Split Functions In Decision Trees Using Gradient Ascent. Heidelberg University
Kandemir, M, Hamprecht, F A, Wojek, C and Schmidt, U (2017). Active machine learning for training an event classification. Patent, Patent Number WO2017032775 A1
Ulman, V, Maška, M, Magnusson, K E G, Ronneberger, O, Haubold, C, Harder, N, Matula, P, Matula, P, Svoboda, D, Radojevic, M, Smal, I, Rohr, K, Jaldén, J, Blau, H M, Dzyubachyk, O, Lelieveldt, B, Xiao, P, Li, Y, Cho, S - Y, Dufour, A, Olivo-Marin, J C, Reyes-Aldasoro, C C, Solis-Lemus, J A, Bensch, R, Brox, T, Stegmaier, J, Mikut, R, Wolf, S, Hamprecht, F A, Esteves, T, Quelhas, P, Demirel, Ö, Malström, L, Jug, F, Tomančák, P, Meijering, E, Muñoz-Barrutia, A, Kozubek, M and Ortiz-de-Solorzano, C (2017). An Objective Comparison of Cell Tracking Algorithms. Nature Methods. 14 1141-1152PDF icon Technical Report (4.24 MB)
Brosowsky, M (2017). Cluster Resolving For Animal Tracking: Multi Hypotheses Tracking With Part Based Model For Object Hypotheses Generation And Pose Estimation. University of Heidelberg
Krause, G (2017). Correlation Of Performance And Entropy In Active Learning With Convolutional Neural Networks. Heidelberg University
Peter, S, Diego, F, Hamprecht, F A and Nadler, B (2017). Cost-efficient Gradient Boosting. NIPS, poster
Haubold, C, Uhlmann, V, Unser, M and Hamprecht, F A (2017). Diverse M-best Solutions by Dynamic Programming. GCPR. Proceedings. Springer. LNCS 10496 255-267
Uhlmann, V, Haubold, C, Hamprecht, F A and Unser, M (2017). Diverse Shortest Paths for Bioimage Analysis. Bioinformatics. 1-3

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