Publications

2010

Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318PDF icon Technical Report (619.11 KB)
Kröger, (2010). Exploratory And Computational Analysis Of Huge Volume Images For Connectomics. University of Heidelberg
Börner, K, Hermle, J, Sommer, C, Brown, N P, Knapp, B, Glass, B, Torralba, G, Reymann, J, Beil, N, Beneke, J, Pepperkok, R, Schneider, R and Ludwig, T (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal. 5 39-49PDF icon Technical Report (556.09 KB)
Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26PDF icon Technical Report (1.43 MB)
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215PDF icon Technical Report (1.44 MB)
Sommer, C (2010). Interactive Learning for the Analysis of Biomedical and Industrial Imagery. University of Heidelberg
Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763PDF icon Technical Report (125.18 KB)
Kausler, B X (2010). Modeling Of Spectral Peaks For Mass-Spectrometry-Based Proteomics. Universities of Karlsruhe and Heidelberg
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2PDF icon Technical Report (481.58 KB)
Renard, B Y (2010). Robust Methods for the Proteomic Data Analysis Pipeline. University of Heidelberg
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x. ArXiv e-prints. http://arxiv.org/abs/1008.2909v1PDF icon Technical Report (415.54 KB)
Andres, B, Kappes, J H, Köthe, U and Hamprecht, F A (2010). The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102PDF icon Technical Report (625.06 KB)
Riedl, M (2010). Using Protein Identification Data To Improve Mass Spectrometry Feature Extraction. University of Heidelberg

2009

Menze, B H, Kelm, B Michael, Masuch, R, Himmelreich, U, Bachert, P, Petrich, W and Hamprecht, F A (2009). A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data. BMC Bioinformatics. 10:213PDF icon Technical Report (675 KB)
Thieke, C, Nix, O, Koehn, A, Floca, R, van Straaten, D, Hahn, H, Strauss, L G, Siems, U, Graf, M, Pruem, H, Klein, J, Laue, H and Kaster, F O (2009). A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy. Strahlentherapie und Onkologie. 185 81
Görlitz, L, Hamprecht, F A and Staudacher, M (2009). Allocation of particles to development processes. PatentPDF icon Technical Report (406.7 KB)
Hayn, M, Beirle, S, Hamprecht, F A, Platt, U, Menze, B H and Wagner, T (2009). Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model. Atmospheric Chemistry and Physics. 9 9367-9398PDF icon Technical Report (2.52 MB)
Jäger, M, Kiel, A, Herten, D - P and Hamprecht, F A (2009). Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process. ChemPhysChem. 10:14 2486-2495
Ozlu, N, Monigatti, F, Renard, B Y, Field, C M, Steen, H, Mitchison, T J and Steen, J J (2009). Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics
Kaster, F O, Kelm, B Michael, Zechmann, C M, Weber, M - A, Hamprecht, F A and Nix, O (2009). Classification of Spectroscopic Images in the DIROlab Environment. World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. Springer. 25/V 252--255PDF icon Technical Report (145.73 KB)
Frank, M, Plaue, M and Hamprecht, F A (2009). Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures. Optical Engineering. 48, 077003PDF icon Technical Report (2.5 MB)
Kelm, B Michael, Menze, B H, Nix, O, Zechmann, C M and Hamprecht, F A (2009). Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge. IEEE Transaction on Medical Imaging. 28:10 1534-1547PDF icon Technical Report (419.8 KB)
Hanselmann, M, Köthe, U, Renard, B Y, Kirchner, M, Heeren, R M A and Hamprecht, F A (2009). Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192PDF icon Technical Report (1.25 MB)
Trittler, S and Hamprecht, F A (2009). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639PDF icon Technical Report (511.23 KB)
Meine, H, Köthe, U and Stelldinger, P (2009). Pixel Approximation Errors in Common Watershed Algorithms. Discrete Geometry for Computer Imagery. Springer. 5810 193-202PDF icon Technical Report (6.5 MB)
Görlitz, L, Menze, B H, Kelm, B Michael and Hamprecht, F A (2009). Processing Spectral Data. Surface and Interface Analysis. 41 636-644PDF icon Technical Report (4.17 MB)
Kassemeyer, S (2009). Quantification Of Tumour Angiogenesis Using Pattern Recognition. University of Heidelberg
Andres, B, Köthe, U, Bonea, A, Nadler, B and Hamprecht, F A (2009). Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times. Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings. Springer. 5748 502-511PDF icon Technical Report (3.08 MB)
Staudacher, M, Hamprecht, F A and Görlitz, L (2009). Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen. Patent, Patent Number WO2009062781A1PDF icon Technical Report (46.64 KB)
Greis, J (2009). Semi-Automatic Analysis Of High-Information-Content Neurobiological Image Data. University of Heidelberg
Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras. Optical Engineering. 48, 013602PDF icon Technical Report (2.03 MB)
Hanselmann, M, Köthe, U, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2009). Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567PDF icon Technical Report (1.47 MB)
Renard, B Y, Kirchner, M, Monigatti, F, Ivanov, A R, Rappsilber, J, Winter, D, Steen, J A J, Hamprecht, F A and Steen, H (2009). When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984PDF icon Technical Report (901.78 KB)

2008

Rapp, H, Frank, M, Hamprecht, F A and Jähne, B (2008). A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras. Int. J. Intelligent Systems Technologies and Applications. 5 402-413PDF icon Technical Report (798.23 KB)
Voss, B (2008). Alignment And Retention Time Correction Of Lc-Ms Data In Proteomics. University of Heidelberg
Kirchner, M (2008). Analysis of Spectral Data. University of Heidelberg
Hanselmann, M, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2008). Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658PDF icon Technical Report (3.91 MB)
Steen, J A J, Steen, H, Georgi, A, Parker, K C, Springer, M, Kirchner, M, Hamprecht, F A and Kirschner, M W (2008). Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074PDF icon Technical Report (173.02 KB)
Staudacher, M, Hamprecht, F A and Görlitz, L (2008). Method for processing an intensity image of a microscope. Patent, Patent Number: WO2008034721A1PDF icon Technical Report (39.81 KB)
Menze, B H, Kelm, B Michael, Weber, M - A, Bachert, P and Hamprecht, F A (2008). Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI. Magnetic Resonance in Medicine. 59 1457-1466PDF icon Technical Report (1.45 MB)

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