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Conference Paper

A. Falkenroth, Herzog, A. G., and Jähne, B., “Visualization of air-water gas exchange using novel fluorescent dyes”, in 12th Intern. Symp. on Flow Visualization, Göttingen, 10--14. September 2006, 2006.

Conference Proceedings

E. Fita, Damrich, S., and Hamprecht, F. A., “The Algebraic Path Problem for Graph Metrics”, 39th International Conference on Machine Learning, PMLR. Proceedings , vol. 162. pp. 19178-19204, 2022.

E. Fita, Damrich, S., and Hamprecht, F. A., “Directed Probabilistic Watershed”, NeurIPS. Proceedings, vol. 34. 2021.

Technical Report (957.78 KB)

E. Jenner, Fita, E., and Hamprecht, F. A., “Extensions of Karger's Algorithm: Why They Fail in Theory and How They Are Useful in Practice”, ICCV. Proceedings. pp. 4602-4611, 2021.

Technical Report (1.1 MB)

S. Wolf, Hamprecht, F. A., and Funke, J., “Inpainting Networks Learn to Separate Cells in Microscopy Images”, BMCV. 2020.

Technical Report (357.23 KB)

M. Bautista, Fuchs, P., and Ommer, B., “Learning Where to Drive by Watching Others”, Proceedings of the German Conference Pattern Recognition, vol. 1. Springer-Verlag, Basel, 2017.

N. Paragios, Faugeras, O., Chan, T., and Schnörr, C., Eds., “Variational, Geometric and Level Sets in Computer Vision (VLSM'05)”, lncs, vol. 3752. Springer, Beijing, China, 2005.

A. Kreshuk, Funke, J., Cardona, A., and Hamprecht, F. A., “Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain”, MICCAI. Proceedings, vol. LNCS 9349. Springer, pp. 661-668, 2015.

Technical Report (2.14 MB)

In Collection

B. Jähne, “Data acquisition by imaging detectors”, Handbook of Experimental Fluid Mechanics. Springer, p. 1419--1436, 2007.

B. Jähne, Klar, M., and Jehle, M., “Data analysis”, Handbook of Experimental Fluid Mechanics. Springer, p. 1437--1491, 2007.

T. Hara, VanInwegen, E., Wendelbo, J., Schimpf, U., Jähne, B., Frew, N. M., and Jähne, B., “Estimation of air-sea gas and heat fluxes from infrared imagery based on near surface turbulence models”, Transport at the Air Sea Interface --- Measurements, Models and Parameterizations. Springer-Verlag, 2007.

S. Wanner, Fehr, J., and Jähne, B., “Generating EPI representations of 4D light fields with a single lens focused plenoptic camera”, Advances in Visual Computing. Springer, p. 90--101, 2011.

U. Schimpf, Frew, N. M., Jähne, B., and Hühnerfuss, H., “Infrared imaging: a novel tool to investigate the influence of surface slicks on air-sea gas transfer”, Marine Surface Films: Chemical Characteristics, Influence on Air-Sea Interactions, and Remote Sensing. Springer, p. 239--252, 2006.

P. S. Liss, Watson, A. J., Bock, E. J., Jähne, B., Asher, W. E., Frew, N. M., Hasse, L., Korenowski, G. M., Merlivat, L., Phillips, L. F., Schlüssel, P., and Woolf, D. K., “Report Group 1 - Physical processes in the microlayer and the air-sea exchange of trace gases”, The Sea Surface and Global Change. Cambridge University Press, p. 1--33, 1997.

B. Jähne, “Struktur und Chaos: Kleinskalige Austauschprozesse zwischen Atmosphäre und Meer”, Heidelberger Jahrbücher Online, Entwicklung – Wie aus Prozessen Strukturen werden, vol. 5. pp. 133–150, 2020.

B. Jähne, “Trockene Deposition von Gasen über Wasser (Gasaustausch)”, Austausch von Luftverunreinigungen an der Grenzfläche Atmospäre/Erdoberfläche, Zwischenbericht für das Umweltbundesamt zum Teilprojekt 1: Deposition von Gasen, BleV-R-64.284-2. Battelle Institut, 1982.

M. Bergtholdt, Cremers, D., and Schnörr, C., “Variational Segmentation with Shape Priors”, Handbook of Mathematical Models in Computer Vision. Springer, pp. 147-160, 2005.

A. Falkenroth, Degreif, K., Jähne, B., and Jähne, B., “Visualisation of oxygen concentration fields in the mass boundary layer by fluorescence quenching”, Transport at the Air Sea Interface --- Measurements, Models and Parameterizations. Springer Verlag, 2007.

B. Jähne, Balschbach, G., and Fuß, D., “Wellenbewegte Wasseroberfläche”, Nahbereichsphotogrammetrie in der Praxis, Beispiele und Problemlösungen. Wichmann, p. 259--262, 2002.

inproceedings

M. Kandemir, Feuchtinger, A., Walch, A., and Hamprecht, F. A., “Digital Pathology: Multiple instance learning can detect Barrett'scancer”, ISBI. Proceedings. pp. 1348-1351, 2014.

Technical Report (2.86 MB)

Journal Article

N. M. Frew, Bock, E. J., Schimpf, U., Hara, T., Haußecker, H., Edson, J. B., McGilles, W. R., Nelson, R. K., McKenna, S. P., Uz, B. M., and Jähne, B., “Air-sea gas transfer: Its dependence on wind stress, small-scale roughness, and surface films”, J. Geophys. Res., vol. 109, p. C08S17, 2004.

K. Hansen, Rathke, F., Schroeter, T., Rast, G., Fox, T., Kriegl, J. M., and Mika, S., “Bias-correction of regression models: a case study on hERG inhibition”, J. Chem. Inf. Model., vol. 49, no. 6, pp. 1486–1496, 2009.

J. Fehr and Jähne, B., “Bilder berechnen - nicht nur aufnehmen”, Optik & Photonik, vol. 7, pp. 50-53, 2012.

J. Fehr and Jähne, B., “Bilder berechnen --- nicht nur aufnehmen : ``Computational Photography'' wird zunehmend interessant für die industrielle Bildverarbeitung”, Optik & Photonik, vol. 7, p. 50--53, 2012.

N. Ozlu, Monigatti, F., Renard, B. Y., Field, C. M., Steen, H., Mitchison, T. J., and Steen, J. J., “Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition”, Molecular & Cellular Proteomics, 2009.

J. Kleesiek, Morshuis, J. Nikolas, Isensee, F., Deike-Hofmann, K., Paech, D., Kickingereder, P., Köthe, U., Rother, C., Forsting, M., Wick, W., Bendszus, M., Schlemmer, H. Peter, and Radbruch, A., “Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study”, Investigative Radiology, vol. 54, pp. 653–660, 2019.

H. Haußecker and Fleet, D. J., “Computing optical flow with physical models of brightness variation”, IEEE Trans. Pattern Analysis Machine Intelligence, vol. 23, p. 661--673, 2001.

M. Frank, Plaue, M., and Hamprecht, F. A., “Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures”, Optical Engineering, vol. 48, 077003, 2009.

Technical Report (2.5 MB)

E. Eyjolfsdottir, Branson, S., Burgos-Artizzu, X. P., Hoopfer, E. D., Schor, J., Anderson, D. J., and Perona, P., “Detection of social actions in fruit flies”, Lecture Notes in Computer Science, vol. 8690, pp. 772–787, 2014.

J. Funke, Andres, B., Hamprecht, F. A., Cardona, A., and Cook, M., “Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data”, CVPR 2012. Proceedings, pp. 1004-1011, 2012.

Technical Report (1.64 MB)

A. Imle, Kumberger, P., Schnellbächer, N. D., Fehr, J., Carillo-Bustamente, P., Ales, J., Schmidt, P., Ritter, C., Godinez, W. J., Müller, B., Rohr, K., Hamprecht, F. A., Schwarz, U. S., Graw, F., and Fackler, O. T., “Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures”, Nature Communications, vol. 13;10(1), 2019.

A. Imle, Kumberger, P., Schnellbächer, N. D., Fehr, J., Carillo-Bustamente, P., Ales, J., Schmidt, P., Ritter, C., Godinez, W. J., Müller, B., Rohr, K., Hamprecht, F. A., Schwarz, U. S., Graw, F., and Fackler, O. T., “Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures”, Nature Communications, vol. 13;10(1), 2019.

D. Fortun, Storath, M., Rickert, D., Weinmann, A., and Unser, M., “Fast Piecewise-Affine Motion Estimation Without Segmentation”, IEEE Transactions on Image Processing, vol. 27 , no. 11, pp. 5612 - 5624, 2018.

C. Thieke, Nix, O., Koehn, A., Floca, R., van Straaten, D., Hahn, H., Strauss, L. G., Siems, U., Graf, M., Pruem, H., Klein, J., Laue, H., and Kaster, F. O., “A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy”, Strahlentherapie und Onkologie, vol. 185, p. 81, 2009.

A. Bruhn, Jakob, T., Fischer, M., Weickert, J., Brüning, U., and Schnörr, C., “High performance cluster computing with 3-D nonlinear diffusion filters”, Real-Time Imaging, vol. 10, pp. 41–51, 2004.

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