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A

Frew, N M, Bock, E J, Schimpf, U, Hara, T, Haußecker, H, Edson, J B, McGilles, W R, Nelson, R K, McKenna, S P, Uz, B M and Jähne, B (2004). Air-sea gas transfer: Its dependence on wind stress, small-scale roughness, and surface films. J. Geophys. Res. 109 C08S17

C

Menze, B H and Ur, J A (2007). Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East. Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland. International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences

Technical Report (920.71 KB)

D

Kleesiek, J, Urban, G, Hubert, A, Schwarz, D, Maier-Hein, K, Bendszus, M and Biller, A (2016). Deep MRI brain extraction: A 3D convolutional neural network for skull stripping.. NeuroImage. 129 460-469

Technical Report (1.14 MB)

Ufer, N and Ommer, B (2017). Deep Semantic Feature Matching. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)

article (8.88 MB)

Bock, E J, Edson, J B, Frew, N M, Karachintsev, A, McGilles, W R, Nelson, R K, Hansen, K, Jähne, B, Hara, T, Uz, B M, Jähne, B, Dieter, J, Klinke, J and Haußecker, H (1995). Description of the science plan for the April 1995 CoOP experiment, `gas transfer in coastal waters', performed from the research vessel New Horizon. Air-Water Gas Transfer, Selected Papers, 3rd Intern. Symp. on Air-Water Gas Transfer. AEON. 801--810

Menze, B H, Ur, J A and Sherratt, A G (2006). Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model. Photgrammetric Engineering & Remote Sensing. 3 321-327

Technical Report (643.89 KB)

Haubold, C, Uhlmann, V, Unser, M and Hamprecht, F A (2017). Diverse M-best Solutions by Dynamic Programming. GCPR. Proceedings. Springer. LNCS 10496 255-267

Haubold, C, Uhlmann, V, Unser, M and Hamprecht, F A (2017). Diverse M-best Solutions by Dynamic Programming. GCPR. Proceedings. Springer. LNCS 10496 255-267

Uhlmann, V, Haubold, C, Hamprecht, F A and Unser, M (2017). Diverse Shortest Paths for Bioimage Analysis. Bioinformatics. 1-3

Uhlmann, V, Haubold, C, Hamprecht, F A and Unser, M (2017). Diverse Shortest Paths for Bioimage Analysis. Bioinformatics. 1-3

F

Fortun, D, Storath, M, Rickert, D, Weinmann, A and Unser, M (2018). Fast Piecewise-Affine Motion Estimation Without Segmentation. IEEE Transactions on Image Processing. 27 5612 - 5624

Storath, M, Rickert, D, Unser, M and Weinmann, A (2017). Fast segmentation from blurred data in 3D fluorescence microscopy. IEEE Transactions on Image Processing. 26

G

Jähne, (2012). Gas transfer at water surfaces. Environmental Fluid Mechanics - Memorial Volume in honour of Professor Gerhard H. Jirka. CRC Press/Balkema. 389--404. http://www.crcnetbase.com/isbn/9780203803967

I

Kleesiek, J, Biller, A, Urban, G, Köthe, U, Bendszus, M and Hamprecht, F A (2014). ilastik for Multi-modal Brain Tumor Segmentation. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace. 12-17

Technical Report (405.91 KB)

J

Levinkov, E, Uhrig, J, Tang, S, Omran, M, Insafutdinov, E, Kirillov, A, Rother, C, Brox, T, Schiele, B and Andres, B (2017). Joint graph decomposition & node labeling: Problem, algorithms, applications. Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. 2017-Janua 1904–1912

Storath, M, Weinmann, A and Unser, M (2017). Jump-penalized least absolute values estimation of scalar or circle-valued signals. Information and Inference. 6 225–245

Technical Report (3.4 MB)

M

Uttenweiler, D, Veigel, C, Steubing, R, Götz, C, Mann, S, Haußecker, H, Jähne, B and Fink, R H A (2000). Motion determination in actin filament fluorescence images with a spatio-temporal orientation analysis method.. Biophys J. Institut für Physiologie und Pathophysiologie, Ruprecht-Karls-Universität Heidelberg, 69120 Heidelberg, Germany. uttenweiler@urz.uni-heidelberg.de. 78 2709--2715

Urban, G, Bendszus, M, Hamprecht, F A and Kleesiek, J (2014). Multi-modal Brain Tumor Segmentation using Deep Convolutional NeuralNetworks. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winningcontribution. 31-35

N

Urban, G (2014). Neural Networks: Optimization And Applications. University of Heidelberg

O

Ulman, V, Maška, M, Magnusson, K E G, Ronneberger, O, Haubold, C, Harder, N, Matula, P, Matula, P, Svoboda, D, Radojevic, M, Smal, I, Rohr, K, Jaldén, J, Blau, H M, Dzyubachyk, O, Lelieveldt, B, Xiao, P, Li, Y, Cho, S - Y, Dufour, A, Olivo-Marin, J C, Reyes-Aldasoro, C C, Solis-Lemus, J A, Bensch, R, Brox, T, Stegmaier, J, Mikut, R, Wolf, S, Hamprecht, F A, Esteves, T, Quelhas, P, Demirel, Ö, Malström, L, Jug, F, Tomančák, P, Meijering, E, Muñoz-Barrutia, A, Kozubek, M and Ortiz-de-Solorzano, C (2017). An Objective Comparison of Cell Tracking Algorithms. Nature Methods. 14 1141-1152

Technical Report (4.24 MB)

Bock, E J, Edson, J B, Frew, N M, Hara, T, Haußecker, H, Jähne, B, McGilles, W R, McKenna, S P, Nelson, R K, Schimpf, U and Uz, B M (2002). Overview of the CoOP experiments: physical and chemical measurements parameterizing air-sea gas transfer. Gas Transfer at Water Surfaces. American Geophysical Union. 127 39--44

S

Uttenweiler, D, Weber, C, Jähne, B, Fink, R H A and Schaar, H (2003). Spatiotemporal anisotropic diffusion filtering to improve signal-to-noise ratios and object restoration in fluorescence microscopic image sequences.. J Biomed Opt. Ruprecht-Karls-Universität Heidelberg, Institut für Physiologie und Pathophysiologie Medical Biophysics, Im Neuenheimer Feld 326, 69120 Heidelberg, Germany. dietmar.uttenweiler@urz.uni-heidelberg.de. 8 40--47. http://dx.doi.org/10.1117/1.1527627

Schurr, U, Schuberth, B, Aloni, R, Pradel, K S, Schmund, D, Jähne, B and Ullrich, C I (1996). Structural and functional evidence for xylem-mediated water transport and high tranpiration in Agrobacterium tumefaciens-induced tumors of Ricinus communis. Botanica Acta. 109 405--412

Hara, T, Uz, B M, Wei, H, Edson, J B, Frew, N M, McGilles, W R, McKenna, S P, Bock, E J, Haußecker, H and Schimpf, U (2002). Surface wave observations during CoOP experiments and their relations to air-sea gas transfer. Gas Transfer at Water Surfaces. American Geophysical Union. 127 45--49

T

Menze, B H, Ur, J A and Sherratt, A G (2005). Tell Spotting - Surveying Near Eastern Settlement Mounds from Space. Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy. 217-223

Technical Report (2.53 MB)

V

Raisch, F, Scharr, H, Kirchgeßner, N, Jähne, B, Fink, R H A and Uttenweiler, D (2002). Velocity and feature estimation of actin filaments using active contours in noisy fluorescence image sequences. Proc. 2nd IASTED Int. Conf. Visualization, Imaging and Image Processing. 645--650

W

Ufer, N, Lui, K To, Schwarz, K, Warkentin, P and Ommer, B (2019). Weakly Supervised Learning of Dense SemanticCorrespondences and Segmentation. German Conference on Pattern Recognition (GCPR)

article (6.1 MB)