Publications

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Journal Article
Kelm, B Michael, Kaster, F O, Henning, A, Weber, M - A, Bachert, P, Bösinger, P, Hamprecht, F A and Menze, B H (2011). Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images. NMR in Biomedicine. 25(1) 1-13PDF icon Technical Report (1.94 MB)
König, T, Menze, B H, Kirchner, M, Monigatti, F, Parker, K C, Patterson, T, Steen, J J, Hamprecht, F A and Steen, H (2008). Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717PDF icon Technical Report (1.16 MB)
Görlitz, L, Menze, B H, Kelm, B Michael and Hamprecht, F A (2009). Processing Spectral Data. Surface and Interface Analysis. 41 636-644PDF icon Technical Report (4.17 MB)
Menze, B H, Lichy, M P, Bachert, P, Kelm, B Michael, Schlemmer, H P and Hamprecht, F A (2006). Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor. NMR in Biomedicine. 19 599-609PDF icon Technical Report (289.77 KB)
Menze, B H, Petrich, W and Hamprecht, F A (2007). Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy. Analytical and Bioanalytical Chemistry. 387 1801-1807PDF icon Technical Report (283.47 KB)
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2PDF icon Technical Report (481.58 KB)
Menze, B H, Kelm, B Michael, Weber, M - A, Bachert, P and Hamprecht, F A (2008). Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI. Magnetic Resonance in Medicine. 59 1457-1466PDF icon Technical Report (1.45 MB)
Kelm, B Michael, Menze, B H, Nix, O, Zechmann, C M and Hamprecht, F A (2009). Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge. IEEE Transaction on Medical Imaging. 28:10 1534-1547PDF icon Technical Report (419.8 KB)
Menze, B H, Ur, J A and Sherratt, A G (2006). Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model. Photgrammetric Engineering & Remote Sensing. 3 321-327PDF icon Technical Report (643.89 KB)
Menze, B H, Kelm, B Michael, Masuch, R, Himmelreich, U, Bachert, P, Petrich, W and Hamprecht, F A (2009). A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data. BMC Bioinformatics. 10:213PDF icon Technical Report (675 KB)
Zechmann, C M, Menze, B H, Kelm, B Michael, Zamecnik, P, Ikinger, U, Waldherr, R, Delorme, S, Hamprecht, F A and Bachert, P (2012). Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer. Academic Radiology. 19, 6 675-684
Kelm, B Michael, Menze, B H, Zechmann, C M, Baudendistel, K T and Hamprecht, F A (2007). Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification. Magnetic Resonance in Medicine. 57 150-159PDF icon Technical Report (348.05 KB)
Hayn, M, Beirle, S, Hamprecht, F A, Platt, U, Menze, B H and Wagner, T (2009). Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model. Atmospheric Chemistry and Physics. 9 9367-9398PDF icon Technical Report (2.52 MB)
Conference Paper
Menze, B H, Muehl, S and Sherratt, A G (2007). Virtual Survey on North Mesopotamian Tell Sites by Means of Satellite Remote Sensing. Broadening Horizons: Multidisciplinary Approaches to Landscape Study. Cambridge Scholars Publishing. 5-29PDF icon Technical Report (1.2 MB)
Menze, B H, Ur, J A and Sherratt, A G (2005). Tell Spotting - Surveying Near Eastern Settlement Mounds from Space. Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy. 217-223PDF icon Technical Report (2.53 MB)
Görlitz, L, Menze, B H, Weber, M - A and Kelm, B Michael (2007). Semi-Supervised Tumor Detection in MRSI With Discriminative Random Fields. Pattern Recognition. Springer. 4713 224-233PDF icon Technical Report (872.46 KB)
Menze, B H, Kelm, B Michael, Splitthoff, N, Köthe, U and Hamprecht, F A (2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469PDF icon Technical Report (665.33 KB)
Menze, B H, Kelm, B Michael, Heck, D, Lichy, M P and Hamprecht, F A (2006). Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images. Bildverarbeitung für die Medizin. 31-36PDF icon Technical Report (672.84 KB)
Menze, B H, Kelm, B Michael and Hamprecht, F A (2007). From eigenspots to fisherspots -- latent spaces in the nonlinear detection of spot patterns in a highly variable background. Advances in data analysis. Springer. 33 255-262PDF icon Technical Report (248.87 KB)
Kaster, F O, Weber, M - A and Hamprecht, F A (2011). Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. LNCS. Springer, Heidelberg. LNCS 6533 74-85PDF icon Technical Report (544.56 KB)
Kaster, F O, Weber, M - A and Hamprecht, F A (2011). Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. LNCS. Springer, Heidelberg. LNCS 6533 74-85PDF icon Technical Report (544.56 KB)
Menze, B H and Ur, J A (2007). Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East. Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland. International Archives of the Photogrammetry, Remote Sensing and Spatial Information SciencesPDF icon Technical Report (920.71 KB)
Menze, B H, Wormit, M, Bachert, P, Lichy, M P, Schlemmer, H - P and Hamprecht, F A (2004). Classification of in vivo magnetic resonance spectra. Classification in ubiquitous challenge: Proceedings of the GfKl 2004. Springer. 362-369PDF icon Technical Report (240.1 KB)
Kelm, B Michael, Menze, B H, Neff, T, Zechmann, C M and Hamprecht, F A (2006). CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.. Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen. Springer. 51-55. http://www.efmi-wg-mip.net/service/bvm2006PDF icon Technical Report (275.25 KB)
Kelm, B Michael, Müller, N, Menze, B H and Hamprecht, F A (2006). Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM. Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis). IEEE Computer Society. 96-103PDF icon Technical Report (232.69 KB)
Kelm, B Michael, Menze, B H and Hamprecht, F A (2005). Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen. VDI-Berichte. 1883 457-466PDF icon Technical Report (221.54 KB)