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Journal Article
Suhr, H, Wehnert, G, Schneider, K, Bittner, C, Scholz, T, Geißler, P, Jähne, B and Scheper, T (1995). In-situ microscopy for on-line characterization of cell-populations in bioreactors, including concentration measurements by depth from focus. Biotechnology and Bioengineering. 47 106--116
Censor, Y, Gibali, A, Lenzen, F and Schnörr, C (2016). The Implicit Convex Feasibility Problem and Its Application to Adaptive Image Denoising. J. Comp. Math. 34 608-623
Wanner, S, Straehle, C N and Goldlücke, B (2013). Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields. CVPR 2013. Proceedings. 1011-1018
Börner, K, Hermle, J, Sommer, C, Brown, N P, Knapp, B, Glass, B, Torralba, G, Reymann, J, Beil, N, Beneke, J, Pepperkok, R, Schneider, R and Ludwig, T (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal. 5 39-49PDF icon Technical Report (556.09 KB)
Thieke, C, Nix, O, Koehn, A, Floca, R, van Straaten, D, Hahn, H, Strauss, L G, Siems, U, Graf, M, Pruem, H, Klein, J, Laue, H and Kaster, F O (2009). A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy. Strahlentherapie und Onkologie. 185 81
Hosni, A, Rhemann, C, Bleyer, M, Rother, C and Gelautz, M (2013). Fast cost-volume filtering for visual correspondence and beyond. IEEE Transactions on Pattern Analysis and Machine Intelligence. 35 504–511
Imle, A, Kumberger, P, Schnellbächer, N D, Fehr, J, Carillo-Bustamente, P, Ales, J, Schmidt, P, Ritter, C, Godinez, W J, Müller, B, Rohr, K, Hamprecht, F A, Schwarz, U S, Graw, F and Fackler, O T (2019). Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures. Nature Communications. 13;10(1)
Imle, A, Kumberger, P, Schnellbächer, N D, Fehr, J, Carillo-Bustamente, P, Ales, J, Schmidt, P, Ritter, C, Godinez, W J, Müller, B, Rohr, K, Hamprecht, F A, Schwarz, U S, Graw, F and Fackler, O T (2019). Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures. Nature Communications. 13;10(1)
Garbe, C S, Spies, H and Jähne, B (2003). Estimation of surface flow and net heat flux from infrared image sequences. Journal of Mathematical Imaging and Vision. 19 159--174
Garbe, C S, Spies, H and Jähne, B (2003). Estimation of complex motion from thermographic image sequences. SPIE Proc. 5073 303--317
Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6PDF icon Technical Report (1.58 MB)
Scholz, J, Wiersbinski, T, Ruhnau, P, Kondermann, D, Garbe, C S, Hain, R and Beushausen, V (2008). Double-pulse planar-LIF investigations using fluorescence motion analysis for mixture formation investigation. Exp. Fluids. 45 583--593
Steen, J A J, Steen, H, Georgi, A, Parker, K C, Springer, M, Kirchner, M, Hamprecht, F A and Kirschner, M W (2008). Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074PDF icon Technical Report (173.02 KB)
Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541PDF icon Technical Report (518.01 KB)
Schilling, H, Diebold, M, Gutsche, M and Jähne, B (2017). On the design of a fractal calibration pattern for improved camera calibration. tm - Technisches Messen. 84 440–451
Hanselmann, M, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2008). Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658PDF icon Technical Report (3.91 MB)
Geese, M, Jähne, B and Ruhnau, P (2012). CNN Based Dark Signal Non-Uniformity Estimation. CNNA. 1-6
Bendinger, A L, Debus, C, Glowa, C, Karger, C P, Peter, J and Storath, M (2019). Bolus arrival time estimation in dynamic contrast-enhanced magnetic resonance imaging of small animals based on spline models, in press. Physics in Medicine and Biology. 64
Voss, B, Stapf, J, Berthe, A and Garbe, C S (2012). Bichromatic Particle Streak Velocimetry bPSV -- Interfacial, v3C3D velocimetry using a single camera. Exp. Fluids
Haußmann, M, Gerwinn, S and Kandemir, M (2019). Bayesian Prior Networks with PAC Training. arXiv preprint arXiv:1906.00816
Kreshuk, A, Walecki, R, Köthe, U, Gierthmühlen, M, Plachta, D, Genoud, C, Haastert-Talini, K and Hamprecht, F A (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154
Kreshuk, A, Walecki, R, Köthe, U, Gierthmühlen, M, Plachta, D, Genoud, C, Haastert-Talini, K and Hamprecht, F A (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154
Mikut, R, Dickmeis, T, Driever, W, Geurts, P, Hamprecht, F A, Kausler, B X, Ledesma-Carbayo, M, Marée, R, Mikula, K, Pantazis, P, Ronneberger, O, Santos, A and Stotzka, R (2013). Automated Processing of Zebrafish Imaging Data: A Survey. Zebrafish. 10 (3)PDF icon Technical Report (1.73 MB)
Abu Alhaija, H, Mustikovela, S Karthik, Mescheder, L, Geiger, A and Rother, C (2018). Augmented Reality Meets Computer Vision: Efficient Data Generation for Urban Driving Scenes. International Journal of Computer Vision. 126 961–972. http://arxiv.org/abs/1708.01566
Abu Alhaija, H, Mustikovela, S K, Mescheder, A, Geiger, C and Rother, C (2018). Augmented Reality Meets Computer Vision Efficient Data Generation for Urban Driving Scenes. IJCV. 1-12PDF icon Technical Report (3.83 MB)
Abu Alhaija, H, Mustikovela, S Karthik, Mescheder, L, Geiger, A and Rother, C (2018). Augmented Reality Meets Computer Vision. International Journal of Computer Vision. In press 1–13
Wahl, A - S, Omlor, W, Rubio, J C, Chen, J L, Zheng, H, Schröter, A, Gullo, M, Weinmann, O, Kobayashi, K, Helmchen, F, Ommer, B and Schwab, M E (2014). Asynchronous Therapy Restores Motor Control by Rewiring of the Rat Corticospinal Tract after Stroke. Science. American Association for The Advancement of Science. 344 1250--1255. http://www.sciencemag.org/content/344/6189/1250
Gianniotis, N, Schnörr, C, Molkenthin, C and Bora, S S (2015). Approximate variational inference based on a finite sample of Gaussian latent variables. Patt.~Anal.~ApplPDF icon Technical Report (1.4 MB)
Görlitz, L, Hamprecht, F A and Staudacher, M (2009). Allocation of particles to development processes. PatentPDF icon Technical Report (406.7 KB)
Banerjee, D, Garbe, C S, Schimpf, U, Jähne, B and Schabel, S (2008). An active thermographic technique for highly resolved heat transport measurements in paper drying. APPITA Journal. 61 244--249. http://search.informit.com.au/documentSummary;dn=113990239180698;res=IELHSS
Wiehler, K, Heers, J, Schnörr, C, Stiehl, H –S and Grigat, R –R (2001). A 1D analog VLSI implementation for non-linear real-time signal preprocessing. Real–Time Imaging. 7 127–142
inproceedings
Milbich, T, Roth, K, Sinha, S, Schmidt, L, Ghassemi, M and Ommer, B (2021). Characterizing Generalization under Out-Of-Distribution Shifts in Deep Metric Learning. https://arxiv.org/abs/2107.09562
In Collection
Falkenroth, A, Degreif, K, Jähne, B and Jähne, B (2007). Visualisation of oxygen concentration fields in the mass boundary layer by fluorescence quenching. Transport at the Air Sea Interface --- Measurements, Models and Parameterizations. Springer Verlag
Richmond, D, Kainmueller, D, Glocker, B, Rother, C and Myers, G (2015). Uncertainty-driven forest predictors for vertebra localization and segmentation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9349 653–660
Hader, S and Hamprecht, F A (2004). Two-Stage Classification with Automatic Feature Selection for an Industrial Application. Classification, the ubiquitous challenge: Proceedings of GfKl 2004. Springer. 137-144PDF icon Technical Report (518.16 KB)

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