Publications

2021

Vijayan, A, Tofanelli, R, Strauss, S, Cerrone, L, Wolny, A, Strohmeier, J, Kreshuk, A, Hamprecht, F A, Smith, R S and Schneitz, K (2021). A Digital 3D Reference Atlas Reveals Cellular Growth Patterns Shaping the Arabidopsis Ovule. eLife

Sanakoyeu, A, Ma, P, Tschernezki, V and Ommer, B (2021). Improving Deep Metric Learning by Divide and Conquer. IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI). https://arxiv.org/abs/2109.04003

Pape, C, Remme, R, Wolny, A, Olberg, S, Wolf, S, Cerrone, L, Cortese, M, Klaus, S, Lucic, B, Ullrich, S, Anders-Össwein, M, Wolf, S, Cerikan, B, Neufeldt, C J, Ganter, M, Schnitzler, P, Merle, U, Lusic, M, Boulant, S, Stanifer, M, Bartenschlager, R, Hamprecht, F A, Kreshuk, A, Tischer, C, Kräusslich, H - G, Müller, B and Laketa, V (2021). Microscopy-based assay for semi-quantitative detection of SARS-CoV-2 specific antibodies in human sera. BioEssays. 43

2020

Wolny, A, Cerrone, L, Vijayan, A, Tofanelli, R, Vilches-Barro, A, Louveaux, M, Wenzel, C, Strauss, S, Wilson-Sanchez, D, Lymbouridou, R, Steigleder, S S, Pape, C, Bailoni, A, Duran-Nebreda, S, Bassel, G W, Lohmann, J U, Tsiantis, M, Hamprecht, F A, Schneitz, K, Maizel, A and Kreshuk, A (2020). Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution. eLife. 9

Bollweg, S, Haußmann, M, Kasieczka, G, Luchmann, M, Plehn, T and Thompson, J (2020). Deep-Learning Jets with Uncertainties and More. SciPost Phys. 8. https://scipost.org/10.21468/SciPostPhys.8.1.006

Technical Report (1.65 MB)

Tourani, S, Shekhovtsov, A, Rother, C and Savchynskyy, B (2020). Taxonomy of Dual Block-Coordinate Ascent Methods for Discrete Energy Minimization. AISTATS 2020. https://gitlab.com/

PDF (2.58 MB)

2019

Krall, K E, Smith, A W, Takagaki, N and Jähne, B (2019). Air–sea gas exchange at wind speeds up to 85 m/s. Ocean Science. 15 1783-–1799

Lu, G -hung, Tsai, W -ting and Jähne, B (2019). Decomposing infrared images of wind waves for quantitative separation into characteristic flow processes. IEEE Transactions on Geoscience and Remote Sensing. 57 8304–8316

Sanakoyeu, A, Tschernezki, V, Büchler, U and Ommer, B (2019). Divide and Conquer the Embedding Space for Metric Learning. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). https://github.com/CompVis/metric-learning-divide-and-conquer

2018

Hodaň, T, Michel, F, Brachmann, E, Kehl, W, Buch, A Glent, Kraft, D, Drost, B, Vidal, J, Ihrke, S, Zabulis, X, Sahin, C, Manhardt, F, Tombari, F, Kim, T Kyun, Matas, J and Rother, C (2018). BOP: Benchmark for 6D object pose estimation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11214 LNCS 19–35. http://arxiv.org/abs/1808.08319

Arnab, A, Zheng, S, Jayasumana, S, Romera-paredes, B, Kirillov, A, Savchynskyy, B, Rother, C, Kahl, F and Torr, P (2018). Conditional Random Fields Meet Deep Neural Networks for Semantic Segmentation. Cvpr. XX 1–15. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.308.8889&rep=rep1&type=pdf%0Ahttp://dx.doi.org/10.1109/CVPR.2012.6248050

Tourani, S, Shekhovtsov, A, Rother, C and Savchynskyy, B (2018). MPLP++: Fast, Parallel Dual Block-Coordinate Ascent for Dense Graphical Models. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11208 LNCS 264–281

2017

Levinkov, E, Uhrig, J, Tang, S, Omran, M, Insafutdinov, E, Kirillov, A, Rother, C, Brox, T, Schiele, B and Andres, B (2017). Joint graph decomposition & node labeling: Problem, algorithms, applications. Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. 2017-Janua 1904–1912

Kirillov, A, Schlesinger, D, Zheng, S, Savchynskyy, B, Torr, P H S and Rother, C (2017). Joint training of generic CNN-CRF models with stochastic optimization. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10112 LNCS 221–236. http://host.robots.ox.ac.uk:8080/leaderboard

Ulman, V, Maška, M, Magnusson, K E G, Ronneberger, O, Haubold, C, Harder, N, Matula, P, Matula, P, Svoboda, D, Radojevic, M, Smal, I, Rohr, K, Jaldén, J, Blau, H M, Dzyubachyk, O, Lelieveldt, B, Xiao, P, Li, Y, Cho, S - Y, Dufour, A, Olivo-Marin, J C, Reyes-Aldasoro, C C, Solis-Lemus, J A, Bensch, R, Brox, T, Stegmaier, J, Mikut, R, Wolf, S, Hamprecht, F A, Esteves, T, Quelhas, P, Demirel, Ö, Malström, L, Jug, F, Tomančák, P, Meijering, E, Muñoz-Barrutia, A, Kozubek, M and Ortiz-de-Solorzano, C (2017). An Objective Comparison of Cell Tracking Algorithms. Nature Methods. 14 1141-1152

Technical Report (4.24 MB)

Massiceti, D, Krull, A, Brachmann, E, Rother, C and Torr, P H S (2017). Random Forests versus Neural Networks − What's best for camera location

2015

Krah, N, Testa, M, Brons, S, Jäkel, O, Parodi, K, Voss, B and Rinaldi, I (2015). An advanced image processing method to improve the spatial resolution of ion radiographies. Physics in Medicine and Biology. 60 8525. http://stacks.iop.org/0031-9155/60/i=21/a=8525

Zheng, S, Prisacariu, V Adrian, Averkiou, M, Cheng, M Ming, Mitra, N J, Shotton, J, Torr, P H S and Rother, C (2015). Object proposals estimation in depth image using compact 3D shape manifolds. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9358 196–208

Mitra, N J, Stam, J, Xu, K, Cheng, M - M, Prisacariu, V Adrian, Zheng, S, Torr, P H S and Rother, C (2015). Pacific Graphics 2015 DenseCut: Densely Connected CRFs for Realtime GrabCut. 34. http://mftp.mmcheng.net/Papers/DenseCut.pdf

Didden, E - M, Thorarinsdottir, T L, Lenkoski, A and Schnörr, C (2015). Shape from Texture using Locally Scaled Point Processes. Image Anal. Stereol. 34 161-170

Trofimova, D (2015). Towards Four Dimensional Visualization of Air-Water Gas Exchange. Institut für Umweltphysik, Fakultät für Physik und Astronomie, Univ. Heidelberg. Dissertation

2014

Takami, M, Bell, P and Ommer, B (2014). An Approach to Large Scale Interactive Retrieval of Cultural Heritage. Eurographics Workshop on Graphics and Cultural Heritage. The Eurographics Association

Technical Report (7.94 MB)

Tek, B F, Kröger, T, Mikula, S and Hamprecht, F A (2014). Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue. ISBI. Proceedings. 69-72

Technical Report (533.92 KB)

Zheng, S, Cheng, M Ming, Warrell, J, Sturgess, P, Vineet, V, Rother, C and Torr, P H S (2014). Dense semantic image segmentation with objects and attributes. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 3214–3221. http://www.robots.ox.ac.uk/˜tvg/http://tu-dresden.de/inf/cvld

Eyjolfsdottir, E, Branson, S, Burgos-Artizzu, X P, Hoopfer, E D, Schor, J, Anderson, D J and Perona, P (2014). Detection of social actions in fruit flies. Lecture Notes in Computer Science. Springer International Publishing, Cham. 8690 772–787. http://link.springer.com/10.1007/978-3-319-10605-2 http://www.ncbi.nlm.nih.gov/pubmed/31629782

Kräuter, C, Trofimova, D, Kiefhaber, D, Krah, N and Jähne, B (2014). High resolution 2-D fluorescence imaging of the mass boundary layer thickness at free water surfaces. J. Europ. Opt. Soc. Rap. Public. 9 14016

Kräuter, C, Trofimova, D, Nagel, L and Jähne, B (2014). High-resolution 2-D fluorescence imaging of gas transfer at a free water surface. Ocean Science Meeting, 23--28. 02. 2014, Honolulu Hawaii

Hoai, M, Torresani, L, De La Torre, F and Rother, C (2014). Learning discriminative localization from weakly labeled data. Pattern Recognition. 47 1523–1534

Takami, M, Bell, P and Ommer, B (2014). Offline Learning of Prototypical Negatives for Efficient Online Exemplar SVM. Winter Conference on Applications of Computer Vision. IEEE. 377--384. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6836075

Eigenstetter, A, Takami, M and Ommer, B (2014). Randomized Max-Margin Compositions for Visual Recognition. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. IEEE. 3590--3597

Technical Report (8.01 MB)

2013

Lenzen, F, Kim, K I, Schäfer, H, Nair, R, Meister, S, Becker, F and Garbe, C S (2013). Denoising Strategies for Time-of-Flight Data. Time-of-Flight Imaging: Algorithms, Sensors and Applications. Springer. 8200 24-25

Lenzen, F, Kim, K In, Schäfer, H, Nair, R, Meister, S, Becker, F and Garbe, C S (2013). Denoising Strategies for Time-of-Flight Data. Time-of-Flight and Depth Imaging: Sensors, Algorithms, and Applications. Springer. 8200 25-45

Technical Report (961.62 KB)

Lenzen, F, Kim, K In, Schäfer, H, Nair, R, Meister, S, Becker, F and Garbe, C S (2013). Denoising Strategies for Time-of-Flight Data. Time-of-Flight and Depth Imaging: Sensors, Algorithms, and Applications. Springer. 8200 25-45

Technical Report (961.62 KB)

Pages