Publications

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Journal Article
B. Michael Kelm, Kaster, F. O., Henning, A., Weber, M. - A., Bachert, P., Bösinger, P., Hamprecht, F. A., and Menze, B. H., Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images, NMR in Biomedicine, vol. 25(1), pp. 1-13, 2011.PDF icon Technical Report (1.94 MB)
T. König, Menze, B. H., Kirchner, M., Monigatti, F., Parker, K. C., Patterson, T., Steen, J. J., Hamprecht, F. A., and Steen, H., Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics, Journal of Proteome Research, vol. 7, pp. 3708-3717, 2008.PDF icon Technical Report (1.16 MB)
L. Görlitz, Menze, B. H., Kelm, B. Michael, and Hamprecht, F. A., Processing Spectral Data, Surface and Interface Analysis, vol. 41, pp. 636-644, 2009.PDF icon Technical Report (4.17 MB)
B. H. Menze, Lichy, M. P., Bachert, P., Kelm, B. Michael, Schlemmer, H. P., and Hamprecht, F. A., Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor, NMR in Biomedicine, vol. 19, pp. 599-609, 2006.PDF icon Technical Report (289.77 KB)
B. H. Menze, Petrich, W., and Hamprecht, F. A., Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy, Analytical and Bioanalytical Chemistry, vol. 387, pp. 1801-1807, 2007.PDF icon Technical Report (283.47 KB)
B. H. Menze and Hamprecht, F. A., Multimodal Medical Image Analysis: from Visualization to Disease Modeling, Zeitschrift für Med. Physik, vol. 1, pp. 1-2, 2010.PDF icon Technical Report (481.58 KB)
B. H. Menze, Kelm, B. Michael, Weber, M. - A., Bachert, P., and Hamprecht, F. A., Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI, Magnetic Resonance in Medicine, vol. 59, pp. 1457-1466, 2008.PDF icon Technical Report (1.45 MB)
B. Michael Kelm, Menze, B. H., Nix, O., Zechmann, C. M., and Hamprecht, F. A., Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge, IEEE Transaction on Medical Imaging, vol. 28:10, pp. 1534-1547, 2009.PDF icon Technical Report (419.8 KB)
B. H. Menze, Ur, J. A., and Sherratt, A. G., Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model, Photgrammetric Engineering & Remote Sensing, vol. 3, pp. 321-327, 2006.PDF icon Technical Report (643.89 KB)
B. H. Menze, Kelm, B. Michael, Masuch, R., Himmelreich, U., Bachert, P., Petrich, W., and Hamprecht, F. A., A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data, BMC Bioinformatics, vol. 10:213, 2009.PDF icon Technical Report (675 KB)
C. M. Zechmann, Menze, B. H., Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Delorme, S., Hamprecht, F. A., and Bachert, P., Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer, Academic Radiology, vol. 19, 6, pp. 675-684, 2012.
B. Michael Kelm, Menze, B. H., Zechmann, C. M., Baudendistel, K. T., and Hamprecht, F. A., Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification, Magnetic Resonance in Medicine, vol. 57, pp. 150-159, 2007.PDF icon Technical Report (348.05 KB)
M. Hayn, Beirle, S., Hamprecht, F. A., Platt, U., Menze, B. H., and Wagner, T., Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model, Atmospheric Chemistry and Physics, vol. 9, pp. 9367-9398, 2009.PDF icon Technical Report (2.52 MB)
Conference Paper
B. H. Menze, Muehl, S., and Sherratt, A. G., Virtual Survey on North Mesopotamian Tell Sites by Means of Satellite Remote Sensing, in Broadening Horizons: Multidisciplinary Approaches to Landscape Study, 2007, pp. 5-29.PDF icon Technical Report (1.2 MB)
B. H. Menze, Ur, J. A., and Sherratt, A. G., Tell Spotting - Surveying Near Eastern Settlement Mounds from Space, in Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy, 2005, pp. 217-223.PDF icon Technical Report (2.53 MB)
L. Görlitz, Menze, B. H., Weber, M. - A., and Kelm, B. Michael, Semi-Supervised Tumor Detection in MRSI With Discriminative Random Fields, in Pattern Recognition, 2007, vol. 4713, pp. 224-233.PDF icon Technical Report (872.46 KB)
B. H. Menze, Kelm, B. Michael, Splitthoff, N., Köthe, U., and Hamprecht, F. A., On oblique random forests, in European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings., 2011, pp. 453-469.PDF icon Technical Report (665.33 KB)
B. H. Menze, Kelm, B. Michael, Heck, D., Lichy, M. P., and Hamprecht, F. A., Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images, in Bildverarbeitung für die Medizin, 2006, pp. 31-36.PDF icon Technical Report (672.84 KB)
B. H. Menze, Kelm, B. Michael, and Hamprecht, F. A., From eigenspots to fisherspots -- latent spaces in the nonlinear detection of spot patterns in a highly variable background, in Advances in data analysis, 2007, vol. 33, pp. 255-262.PDF icon Technical Report (248.87 KB)
F. O. Kaster, Weber, M. - A., and Hamprecht, F. A., Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations, in LNCS, 2011, vol. LNCS 6533, pp. 74-85.PDF icon Technical Report (544.56 KB)
F. O. Kaster, Weber, M. - A., and Hamprecht, F. A., Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations, in LNCS, 2011, vol. LNCS 6533, pp. 74-85.PDF icon Technical Report (544.56 KB)
B. H. Menze and Ur, J. A., Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East, in Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland, 2007.PDF icon Technical Report (920.71 KB)
B. H. Menze, Wormit, M., Bachert, P., Lichy, M. P., Schlemmer, H. - P., and Hamprecht, F. A., Classification of in vivo magnetic resonance spectra, in Classification in ubiquitous challenge: Proceedings of the GfKl 2004, 2004, pp. 362-369.PDF icon Technical Report (240.1 KB)
B. Michael Kelm, Menze, B. H., Neff, T., Zechmann, C. M., and Hamprecht, F. A., CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods., in Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, 2006, pp. 51-55.PDF icon Technical Report (275.25 KB)
B. Michael Kelm, Müller, N., Menze, B. H., and Hamprecht, F. A., Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM, in Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis), 2006, pp. 96-103.PDF icon Technical Report (232.69 KB)
B. Michael Kelm, Menze, B. H., and Hamprecht, F. A., Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen, in VDI-Berichte, 2005, vol. 1883, pp. 457-466.PDF icon Technical Report (221.54 KB)