Publications
amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R. Journal of Statistical Software. 18 1-12. http://www.jstatsoft.org/v18/i04/paper
(2007). Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics
(2009). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83
Technical Report (380.19 KB)
(2010). 
Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541
Technical Report (518.01 KB)
(2010). 
Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074
Technical Report (173.02 KB)
(2008). 
Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318
Technical Report (619.11 KB)
(2010). 
MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763
Technical Report (125.18 KB)
(2010). 
NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355
Technical Report (643.89 KB)
(2008). 
Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11
Technical Report (444.6 KB)
(2012). 
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717
Technical Report (1.16 MB)
(2008). 
When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984
Technical Report (901.78 KB)
(2009). 