Publications of the Hamprecht lab

2017

Beier, T, Pape, C, Rahaman, N, Prage, T, Berg, S, Bock, D, Cardona, A, Knott, G W, Plaza, S M, Scheffer, L K, Köthe, U, Kreshuk, A and Hamprecht, F A (2017). Multicut brings automated neurite segmentation closer to human performance . Nature Methods, in press
Storath, M, Brandt, C, Hofmann, M, Knopp, T, Salamon, J, Weber, A and Weinmann, A (2017). Edge preserving and noise reducing reconstruction for magnetic particle imaging. IEEE Transactions on Medical Imaging. 36 74 - 85
Storath, M, Weinmann, A and Unser, M (2017). Jump-penalized least absolute values estimation of scalar or circle-valued signals. Information and Inference, in pressPDF icon Technical Report (3.4 MB)

2016

Meijering, E, Carpenter, A E, Peng, H, Hamprecht, F A and Olivo-Marin, J (2016). Imagining the future of bioimage analysis. Nature Biotechnology. 34 1250-1255
Haubold, C, Ales, J, Wolf, S and Hamprecht, F A (2016). A Generalized Successive Shortest Paths Solver for Tracking Dividing Targets. ECCV. Proceedings. Springer. LNCS 9911 566-582PDF icon Technical Report (1.18 MB)
Beier, T, Andres, B, Köthe, U and Hamprecht, F A (2016). An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem. ECCV. Proceedings. Springer. LNCS 9906 715-730PDF icon Technical Report (4.89 MB)
von Borstel, M, Kandemir, M, Schmidt, P, Rao, M, Rajamani, K and Hamprecht, F A (2016). Gaussian process density counting from weak supervision. ECCV. Proceedings. Springer. LNCS 9905 365-380 PDF icon Technical Report (1.71 MB)
Schiegg, M, Diego, F and Hamprecht, F A (2016). Learning Diverse Models: The Coulomb Structured Support Vector Machine. ECCV. Proceedings. Springer. LNCS 9907 585-599PDF icon Technical Report (2.54 MB)
Krasowski, N (2016). Automated Segmentation for Connectomics Utilizing Higher-Order Biological Priors. University of Heidelberg
Pape, C (2016). Automatic Segmentation Of Neurites From Anisotropic Em-Imaging. University of Heidelberg
Prange, T (2016). Automatic Segmentation Of Neurons In Electron Microscopy Data With Membrane Defects. University of Heidelberg
Wolf, S (2016). Cell Tracking With Graphical Model Using Higher Order Features On Track Segments. University of Heidelberg
Baust, M, Weinmann, A, Wieczorek, M, Lasser, T, Storath, M and Navab, N (2016). Combined Tensor Fitting and TV Regularization in Diffusion Tensor Imaging based on a Riemannian Manifold Approach. IEEE Transactions on Medical Imaging. 35 1972–1989
Kleesiek, J, Urban, G, Hubert, A, Schwarz, D, Maier-Hein, K, Bendszus, M and Biller, A (2016). Deep MRI brain extraction: A 3D convolutional neural network for skull stripping.. NeuroImage. 129 460-469
Biller, A, Badde, S, Nagel, A, Neumann, J O, Wick, W, Hertenstein, A, Bendszus, M, Sahm, F, Benkhedah, N and Kleesiek, J (2016). Improved Brain Tumor Classification by Sodium MR Imaging: Prediction of IDH Mutation Status and Tumor Progression. American Journal of Neuroradiology. 37 66-73
Stefanoiu, A, Weinmann, A, Storath, M, Navab, N and Baust, M (2016). Joint Segmentation and Shape Regularization with a Generalized Forward Backward Algorithm. IEEE Transactions on Image Processing. 25 3384 - 3394
von Borstel, M (2016). Learning To Count From Weak Supervision. University of Heidelberg
Balluff, B, Hanselmann, M and Heeren, R M A (2016). Mass spectrometry imaging for the investigation of intratumor heterogeneity. in press
Haubold, C, Schiegg, M, Kreshuk, A, Berg, S, Köthe, U and Hamprecht, F A (2016). Segmenting and Tracking Multiple Dividing Targets Using ilastik. Focus on Bio-Image Informatics. Springer. 219 199-229PDF icon Technical Report (4.46 MB)
Kiem, A (2016). Structured Learning On Calcium Imaging Data. University of Heidelberg
Diego, F and Hamprecht, F A (2016). Structured Regression Gradient Boosting. CVPR. Proceedings. 1459-1467PDF icon Technical Report (3.97 MB)
Kandemir, M, Haußmann, M, Diego, F, Rajamani, K, van der Laak, J and Hamprecht, F A (2016). Variational weakly-supervised Gaussian processes. BMVC. ProceedingsPDF icon kandemir_16_variational.pdf (3.28 MB)
Kleesiek, J, Petersen, J, Döring, M, Maier-Hein, K, Köthe, U, Wick, W, Hamprecht, F A, Bendszus, M and Biller, A (2016). Virtual Raters for Reproducible and Objective Assessments in Radiology. Nature Scientific Reports. 6

2015

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015). A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems. International Journal of Computer Vision. 1-30PDF icon Technical Report (1.5 MB)
Kandemir, M (2015). Asymmetric transfer learning with deep Gaussian processes. ICML. Proceedings. 730-738PDF icon Technical Report (570.95 KB)
Kreshuk, A, Walecki, R, Köthe, U, Gierthmühlen, M, Plachta, D, Genoud, C, Haastert-Talini, K and Hamprecht, F A (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154
Kandemir, M and Hamprecht, F A (2015). Cell event detection in phase-contrast microscopy sequences from few annotations. MICCAI. Proceedings. Springer. LNCS 9351 316-323PDF icon Technical Report (564.69 KB)
Beier, T, Hamprecht, F A and Kappes, J H (2015). Fusion Moves for Correlation Clustering. CVPR. Proceedings. 3507-3516PDF icon Technical Report (1.19 MB)
Schiegg, M, Hanslovsky, P, Haubold, C, Köthe, U, Hufnagel, L and Hamprecht, F A (2015). Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell. Bioinformatics. 31 948-956. http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref&ijkey=mTXWsiFrci7R8tcPDF icon Technical Report (534.29 KB)
Krasowski, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2015). Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539PDF icon Technical Report (2.25 MB)
Funke, J, Hamprecht, F A and Zhang, C (2015). Learning to Segment: Training Hierarchical Segmentation under a Topological Loss. MICCAI. Proceedings, Part III. Springer. 9351 268-275PDF icon Technical Report (2.92 MB)
Schiegg, M (2015). Multi-Target Tracking with Probabilistic Graphical Models. University of Heidelberg
Schiegg, M, Heuer, B, Haubold, C, Wolf, S, Köthe, U and Hamprecht, F A (2015). Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models. ISBI. Proceedings. 394-398PDF icon Technical Report (648.55 KB)
Peter, S (2015). Spatio-Temporal Motif Deconvolution For Calcium Image Analysis. University of Heidelberg
Kandemir, M and Hamprecht, F A (2015). The Deep Feed-Forward Gaussian Process: An Effective Generalization to Covariance Priors. NIPS. Proceedings. 44 145-159PDF icon Supplementary Material (223.39 KB)PDF icon Technical Report (2.58 MB)
Cal, C, Baghabra, J, Boges, D J, Holst, G R, Kreshuk, A, Hamprecht, F A, Srinivasan, M, Lehväslaiho, H and Magistretti, P J (2015). Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues. Journal of Comparative Neurology. 524 23-38
Kauppi, J P, Kandemir, M, Saarinen, V M, Hirvenkari, L, Parkkonen, L, Klami, A, Hari, R and Kaski, S (2015). Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals. NeuroImage. 112 288-298PDF icon Technical Report (2.39 MB)
Kreshuk, A, Funke, J, Cardona, A and Hamprecht, F A (2015). Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain. MICCAI. Proceedings. Springer. LNCS 9349 661-668PDF icon Technical Report (2.14 MB)

2014

Kappes, J H, Beier, T and Schnörr, C (2014). MAP-Inference on Large Scale Higher-Order Discrete Graphical Models by Fusion Moves. Computer Vision - {ECCV} 2014 Workshops - Zurich, Switzerland, September 6-7 and 12, 2014, Proceedings, Part {II}. http://dx.doi.org/10.1007/978-3-319-16181-5_37PDF icon Technical Report (557.49 KB)
Lou, X, Schiegg, M and Hamprecht, F A (2014). Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability. IEEE Transactions on Medical Imaging. 33 (4) 849-860PDF icon Technical Report (6.84 MB)
Kröger, T, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2014). Asymmetric Cuts: Joint Image Labeling and Partitioning. Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings. http://dx.doi.org/10.1007/978-3-319-11752-2_16PDF icon Technical Report (3.46 MB)
Decker, C (2014). Automated Animal Behavior Classification. University of Heidelberg
Tek, B F, Kröger, T, Mikula, S and Hamprecht, F A (2014). Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue. ISBI. Proceedings. 69-72PDF icon Technical Report (533.92 KB)
Kreshuk, A, Köthe, U, Pax, E, Bock, D D and Hamprecht, F A (2014). Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2PDF icon Technical Report (16.66 MB)
Welbl, J (2014). Casting Random Forests as Artificial Neural Networks (and Profiting from It). GCPR. Proceedings. 765-771PDF icon Technical Report (376.24 KB)
Zhang, C, Yarkony, J and Hamprecht, F A (2014). Cell detection and segmentation using correlation clustering. MICCAI. Proceedings. Springer. 9-16PDF icon Technical Report (8.06 MB)
Kandemir, M and Hamprecht, F A (2014). Computer-aided diagnosis from weak supervision: A benchmarking study. Computerized Medical Imaging and Graphics. 42 44-50PDF icon Technical Report (4.28 MB)
Beier, T, Kröger, T, Kappes, J H, Köthe, U and Hamprecht, F A (2014). Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning. 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014. http://dx.doi.org/10.1109/CVPR.2014.17PDF icon Technical Report (10.06 MB)
Decker, C and Hamprecht, F A (2014). Detecting individual body parts improves mouse behavior classification. Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB), 22nd International Conference on Pattern Recognition (ICPR). ProceedingsPDF icon Technical Report (1.48 MB)
Kandemir, M, Feuchtinger, A, Walch, A and Hamprecht, F A (2014). Digital Pathology: Multiple instance learning can detect Barrett'scancer. ISBI. Proceedings. 1348-1351PDF icon Technical Report (2.86 MB)
Kandemir, M, Zhang, C and Hamprecht, F A (2014). Empowering multiple instance histopathology cancer diagnosis by cell graphs. MICCAI. Proceedings. Springer. 8674 228-235PDF icon Technical Report (1.76 MB)
Kandemir, M, Rubio, J C, Schmidt, U, Welbl, J, Ommer, B and Hamprecht, F A (2014). Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures. MICCAI. Proceedings. Springer. 154-161PDF icon Paper (2 MB)
Kandemir, M, Rubio, J C, Schmidt, U, Wojek, C, Welbl, J, Ommer, B and Hamprecht, F A (2014). Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures. Medical Image Computing and Computer-Assisted Intervention. Springer. 154--161PDF icon Technical Report (2 MB)
Beier, T (2014). Graph Based Image Analysis. University of Heidelberg
Lindner, R, Lou, X, Reinstein, J, Shoeman, R L, Hamprecht, F A and Winkler, A (2014). Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation. Journal of The American Society for Mass Spectrometry. 25 1018-1028PDF icon Technical Report (2.1 MB)
Yarkony, J, Zhang, C and Fowlkes, C C (2014). Hierarchical Planar Correlation Clustering for Cell Segmentation. EMMCVPR. Proceedings. Springer. 8932 492-504PDF icon Technical Report (548.12 KB)
Kleesiek, J, Biller, A, Urban, G, Köthe, U, Bendszus, M and Hamprecht, F A (2014). ilastik for Multi-modal Brain Tumor Segmentation. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace. 12-17PDF icon Technical Report (405.91 KB)
Blumenthal, F (2014). Information-Geometric Optimization For Image Segmentation. University of Heidelberg
Kandemir, M and Hamprecht, F A (2014). Instance Label Prediction by Dirichlet Process Multiple Instance Learning. UAI. ProceedingsPDF icon Technical Report (4.26 MB)
Straehle, C (2014). Interactive Segmentation, Uncertainty and Learning. University of Heidelberg
Kröger, (2014). Learning-based Segmentation for Connectomics. University of Heidelberg
Urban, G, Bendszus, M, Hamprecht, F A and Kleesiek, J (2014). Multi-modal Brain Tumor Segmentation using Deep Convolutional NeuralNetworks. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winningcontribution. 31-35
Kandemir, M, Klami, A, Gonen, M, Vetek, A and Kaski, S (2014). Multi-task and multi-view learning of user state. Neurocomputing. 139 97-106
Wieler, M (2014). Multiple Instance Learning with Random Forests and Applications in Industrial Optical Inspection. University of Heidelberg
Straehle, C, Kandemir, M, Köthe, U and Hamprecht, F A (2014). Multiple instance learning with response-optimized random forests. ICPR. Proceedings. 3768 - 3773PDF icon Technical Report (296.66 KB)
Urban, G (2014). Neural Networks: Optimization And Applications. University of Heidelberg
Yarkony, J, Beier, T, Baldi, P and Hamprecht, F A (2014). Parallel Multicut Segmentation via Dual Decomposition. New Frontiers in Mining Complex Patterns - Third International Workshop, {NFMCP} 2014, Held in Conjunction with {ECML-PKDD} 2014, Nancy, France, September 19, 2014, Revised Selected Papers. http://dx.doi.org/10.1007/978-3-319-17876-9_4
Drory, A, Haubold, C, Avidan, S and Hamprecht, F A (2014). Semi-Global Matching: A Principled Derivation in Terms of Message Passing. GCPR. Proceedings. 43-53PDF icon Technical Report (2.6 MB)
Maco, B, Cantoni, M, Holtmaat, A, Kreshuk, A, Hamprecht, F A and Knott, G (2014). Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites. Nature Protocols. 9 1354-1366PDF icon Technical Report (2.01 MB)
Köthe, U, Herrmannsdörfer, F, Kats, I and Hamprecht, F A (2014). SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy. Histochemistry and Cell Biology. 141 613-627PDF icon Technical Report (2.29 MB)
Diego, F and Hamprecht, F A (2014). Sparse Space-Time Deconvolution for Calcium Image Analysis. NIPS. Proceedings. 64-72. http://papers.nips.cc/paper/5342-sparse-space-time-deconvolution-for-calcium-image-analysisPDF icon Technical Report (5.27 MB)
Lou, X, Kloft, M, Rätsch, G and Hamprecht, F A (2014). Structured Learning from Cheap Data. Advanced Structured Prediction. The MIT PressPDF icon Technical Report (8.35 MB)
Fiaschi, L, Diego, F, Grosser, K - H, Schiegg, M, Köthe, U, Zlatic, M and Hamprecht, F A (2014). Tracking indistinguishable translucent objects over time using weakly supervised structured learning. CVPR. Proceedings. 2736 - 2743PDF icon Technical Report (1.47 MB)
Zhang, C, Huber, F, Knop, M and Hamprecht, F A (2014). Yeast Cell Detection and Segmentation in Bright Field Microscopy. ISBI. Proceedings. IEEE Computer Society. 1267-1270PDF icon Technical Report (4.13 MB)

2013

Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Sungwoong, K, Kausler, B X, Lellmann, J, Komodakis, N and Rother, C (2013). A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems. CVPR 2013. ProceedingsPDF icon Technical Report (1.35 MB)
Röder, (2013). Active Learning: New Approaches, and Industrial Applications. University of Heidelberg
Hanslovsky, P (2013). Advanced Cell Tacking-By-Assignment. University of Heidelberg
Diego, F, Reichinnek, S, Both, M and Hamprecht, F A (2013). Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning. ISBI 2013. Proceedings. 1058-1061PDF icon Technical Report (2.82 MB)
Mikut, R, Dickmeis, T, Driever, W, Geurts, P, Hamprecht, F A, Kausler, B X, Ledesma-Carbayo, M, Marée, R, Mikula, K, Pantazis, P, Ronneberger, O, Santos, A and Stotzka, R (2013). Automated Processing of Zebrafish Imaging Data: A Survey. Zebrafish. 10 (3)PDF icon Technical Report (1.73 MB)
Schiegg, M, Hanslovsky, P, Kausler, B X, Hufnagel, L and Hamprecht, F A (2013). Conservation Tracking. ICCV 2013. Proceedings. 2928--2935PDF icon Technical Report (5.22 MB)
Maco, B, Holtmaat, A, Cantoni, M, Kreshuk, A, Straehle, C N, Hamprecht, F A and Knott, G W (2013). Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PloS one. 8 (2)PDF icon Technical Report (2.13 MB)
Wanner, S, Straehle, C and Goldlücke, B (2013). Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields. CVPR 2013. Proceedings. 1011-1018
Straehle, C, Peter, S, Köthe, U and Hamprecht, F A (2013). K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384PDF icon Technical Report (1.18 MB)
Fiaschi, L, Grosser, K - H, Afonso, B, Zlatic, M and Hamprecht, F A (2013). Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects. ISBI 2013.Proceedings. 656-659PDF icon Technical Report (711.68 KB)
Walecki, R (2013). Large-Scale Automatic Reconstruction Of Myelianated Axons And Detection Of The Nodes Of Ranvier. University of Heidelberg
Fiaschi, L (2013). Learning Based Biological Image Analysis. University of Heidelberg
Diego, F and Hamprecht, F A (2013). Learning Multi-Level Sparse Representation. NIPS. Proceedings. http://papers.nips.cc/paper/5076-learning-multi-level-sparse-representationsPDF icon Technical Report (2.79 MB)
Diego, F and Hamprecht, F A (2013). Learning Multi-Level Sparse Representation for Identifying Neuronal Activity. Signal Processing with Adaptive Sparse Structured Representations Workshop (SPARS). Book of AbstractsPDF icon Technical Report (1.05 MB)
Kröger, T, Mikula, S, Denk, W, Köthe, U and Hamprecht, F A (2013). Learning to Segment Neurons with Non-local Quality Measures. MICCAI 2013. Proceedings, part II. Springer. 8150 419-427PDF icon Technical Report (2.87 MB)
Herrmannsdörfer, (2013). Simplestorm An Efficient Selfcalibrating Reconstruction Algorithm For Single And Multi-Channel Localisation Microscopy. University of Heidelberg
Kausler, B (2013). Tracking-by-Assignment as a Probabilistic Graphical Model with Applications in Developmental Biology. University of Heidelberg
Straehle, C, Köthe, U and Hamprecht, F A (2013). Weakly supervised learning of image partitioning using decision trees with structured split criteria. ICCV 2013. Proceedings. 1849-1856PDF icon Technical Report (5.97 MB)
Xu, B (2013). Weakly Supervised Learning: Active Schemes And Partial Annotations. University of Heidelberg

2012

Kausler, B X, Schiegg, M, Andres, B, Lindner, M, Köthe, U, Leitte, H, Wittbrodt, J, Hufnagel, L and Hamprecht, F A (2012). A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness. ECCV 2012. Proceedings. 7574 144-157PDF icon Technical Report (809.07 KB)
Andres, B, Kröger, T, Briggmann, K L, Denk, W, Norogod, N, Knott, G, Köthe, U and Hamprecht, F A (2012). Globally Optimal Closed-Surface Segmentation for Connectomics. ECCV 2012. Proceedings, Part 3. 778-791PDF icon Technical Report (2.72 MB)
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2012). The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12PDF icon Technical Report (446.28 KB)
Andres, B, Köthe, U, Kröger, T, Helmstaedter, M, Briggman, K L, Denk, W and Hamprecht, F A (2012). 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis. 16 (2012) 796-805PDF icon Technical Report (20.85 MB)
Hanselmann, M, Röder, J, Köthe, U, Renard, B Y, Heeren, R M A and Hamprecht, F A (2012). Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images. Analytical Chemistry. 85 (1) 147-155PDF icon Technical Report (2.58 MB)
Röder, J, Kunzmann, K, Nadler, B and Hamprecht, F A (2012). Active Learning with Distributional Estimates. UAI 2012. Proceedings. 715-725PDF icon Technical Report (267.67 KB)
Kreshuk, A (2012). Automated Analysis of Biomedical Data from Low to High Resolution. University of Heidelberg
Zechmann, C M, Menze, B H, Kelm, B M, Zamecnik, P, Ikinger, U, Waldherr, R, Delorme, S, Hamprecht, F A and Bachert, P (2012). Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer. Academic Radiology. 19, 6 675-684
Funke, J, Andres, B, Hamprecht, F A, Cardona, A and Cook, M (2012). Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data. CVPR 2012. Proceedings. 1004-1011PDF icon Technical Report (1.64 MB)
Diego, F, Serrat, J and López, A M (2012). Joint SpatioTemporal Alignment of Sequences. IEEE Transactions on Multimedia (TMM). PP (99) 1PDF icon Technical Report (5.15 MB)
Fiaschi, L, Nair, R, Köthe, U and Hamprecht, F A (2012). Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688PDF icon Technical Report (3.66 MB)
Lou, X and Hamprecht, F A (2012). Learning to Segment Dense Cell Nuclei with Shape Prior. CVPR 2012. Proceedings. 1012-1018PDF icon Technical Report (2.66 MB)
Sommer, C, Fiaschi, L, Hamprecht, F A and Gerlich, D (2012). Learning-based Mitotic Cell Detection in Histopathological Images. ICPR 2012. Proceedings. 2306-2309PDF icon Technical Report (1.96 MB)
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). One plus one makes three (for social networks). PLoS ONE. 4,7
Renard, B, Xu, B, Kirchner, M, Zickmann, F, Winter, D, Korten, S, Brattig, N, Tzur, A, Hamprecht, F A and Steen, H (2012). Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11PDF icon Technical Report (444.6 KB)
Lou, X, Fiaschi, L, Köthe, U and Hamprecht, F A (2012). Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183PDF icon Technical Report (4.15 MB)
Álvarez, J M, Gevers, T, Diego, F and López, A M (2012). Road Geometry Classification by Adaptive Shape Models. IEEE Transactions on Intelligent Transportation Systems (ITS). 99 1-10
Straehle, C, Köthe, U, Briggman, K, Denk, W and Hamprecht, F A (2012). Seeded watershed cut uncertainty estimators for guided interactive segmentation. CVPR 2012. Proceedings. 765 - 772PDF icon Technical Report (2.84 MB)
Lou, X and Hamprecht, F A (2012). Structured Learning from Partial Annotations. ICML 2012. Proceedings. http://icml.cc/discuss/2012/753.htmlPDF icon Technical Report (843.45 KB)
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). You Are Who Knows You: Predicting Links Between Non-Members of Facebook. European Conference on Complex Systems. Proceedings. 3 309-315PDF icon Technical Report (1.92 MB)

2011

Wanner, S, Sommer, C, Rocholz, R, Hamprecht, F A and Jähne, B (2011). A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface. 16th International Workshop on Vision, Modelling and Visualization. Eurographics Association, Germany. 199-206PDF icon Technical Report (4.67 MB)
Lindner, M (2011). A Machine Learning Approach To Improve Digital Embryo Analysis. University of Heidelberg
Kaster, F O, Merkel, B, Nix, O and Hamprecht, F A (2011). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Computer Science - Research and Development. 26 65-85PDF icon Technical Report (808.16 KB)
Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)PDF icon Technical Report (290.48 KB)
Andres, B (2011). Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model. University of Heidelberg
Lou, X (2011). Biomedical Data Analysis with Prior Knowledge: Modeling and Learning. University of Heidelberg
Straehle, C N, Köthe, U, Knott, G and Hamprecht, F A (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660PDF icon Technical Report (1.69 MB)
Kaster, F, Weber, M - A and Hamprecht, F A (2011). Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. LNCS. Springer, Heidelberg. LNCS 6533 74-85PDF icon Technical Report (544.56 KB)
Lou, X, Kaster, F, Lindner, M, Kausler, B, Köthe, U, Höckendorf, B, Wittbrodt, J, Jänicke, H and Hamprecht, F A (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560PDF icon Technical Report (1.44 MB)
Röder, J, Tolosana-Delgado, R and Hamprecht, F A (2011). Gaussian process classification: singly versus doubly stochastic models, and new computational schemes. Stochastic Environmental Research & Risk Assessment. 25 (7) 865-879PDF icon Technical Report (672.68 KB)
Kappes, J H, Speth, M, Andres, B, Reinelt, G and Schnörr, C (2011). Globally Optimal Image Partitioning by Multicuts. EMMCVPR. Springer. 31-44PDF icon Technical Report (7.3 MB)
Kaster, F (2011). Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics. University of Heidelberg
Schleicher, J (2011). Image Processing For Super-Resolution Localization Microscopy Utilizing An Fpga Accelerator. University of Heidelberg
Frank, M and Hamprecht, F A (2011). Image-Based Supervision of a Periodically Working Machine. Pattern Analysis and Applications. 1-10PDF icon Technical Report (466.61 KB)
Straehle, C (2011). Interactive Segmentation Of Neural Electron Microscopy Data. University of Heidelberg
Menze, B, Kelm, B H, Splitthoff, N, Köthe, U and Hamprecht, F A (2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469PDF icon Technical Report (665.33 KB)
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. ICCV, Proceedings. 2611 - 2618PDF icon Technical Report (8.18 MB)
Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993PDF icon Technical Report (2.2 MB)
Lou, X and Hamprecht, F A (2011). Structured Learning for Cell Tracking. NIPS 2011. Proceedings. 1296-1304PDF icon Technical Report (1.41 MB)
Kelm, B M, Kaster, F, Henning, A, Weber, M - A, Bachert, P, Bösinger, P, Hamprecht, F A and Menze, B H (2011). Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images. NMR in Biomedicine. 25(1) 1-13PDF icon Technical Report (1.94 MB)
Pfannmöller, M, Flügge, H, Benner, G, Wacker, I, Sommer, C, Hanselmann, M, Schmale, S, Schmidt, H, Hamprecht, F A, Rabe, T, Kowalsky, W and Schröder, R (2011). Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy. Nano Letters. 11 3099-3107

2010

Hüsken, (2010). Active And Online Learning For Interactive Image Analysis. University of Heidelberg
Kaster, F O, Kassemeyer, S, Merkel, B, Nix, O and Hamprecht, F A (2010). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Bildverarbeitung für die Medizin 2010 -- Algorithmen, Systeme, Anwendungen. Springer. 97-101PDF icon Technical Report (1.12 MB)
Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131PDF icon Technical Report (3.22 MB)
Scheelen, C (2010). Automated Quality Control In The Life Sciences. University of Heidelberg
Hanselmann, M (2010). Computational Methods for the Analysis of Mass Spectrometry Images. University of Heidelberg
Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83PDF icon Technical Report (380.19 KB)
Nair, R (2010). Construction And Analysis Of Random Tree Ensembles. University of Heidelberg
Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541PDF icon Technical Report (518.01 KB)
Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318PDF icon Technical Report (619.11 KB)
Kröger, (2010). Exploratory And Computational Analysis Of Huge Volume Images For Connectomics. University of Heidelberg
Börner, K, Hermle, J, Sommer, C, Brown, N P, Knapp, B, Glass, B, Torralba, G, Reymann, J, Beil, N, Beneke, J, Pepperkok, R, Schneider, R and Ludwig, T (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal. 5 39-49PDF icon Technical Report (556.09 KB)
Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26PDF icon Technical Report (1.43 MB)
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215PDF icon Technical Report (1.44 MB)
Sommer, C (2010). Interactive Learning for the Analysis of Biomedical and Industrial Imagery. University of Heidelberg
Kirchner, M, Steen, J, Hamprecht, F A and Steen, H (2010). MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763PDF icon Technical Report (125.18 KB)
Kausler, B (2010). Modeling Of Spectral Peaks For Mass-Spectrometry-Based Proteomics. Universities of Karlsruhe and Heidelberg
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2PDF icon Technical Report (481.58 KB)
Renard, B (2010). Robust Methods for the Proteomic Data Analysis Pipeline. University of Heidelberg
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x. ArXiv e-prints. http://arxiv.org/abs/1008.2909v1PDF icon Technical Report (415.54 KB)
Andres, B, Kappes, J H, Köthe, U and Hamprecht, F A (2010). The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102PDF icon Technical Report (625.06 KB)
Riedl, M (2010). Using Protein Identification Data To Improve Mass Spectrometry Feature Extraction. University of Heidelberg

2009

Menze, B H, Kelm, B M, Masuch, R, Himmelreich, U, Bachert, P, Petrich, W and Hamprecht, F A (2009). A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data. BMC Bioinformatics. 10:213PDF icon Technical Report (675 KB)
Thieke, C, Nix, O, Koehn, A, Floca, R, van Straaten, D, Hahn, H, Strauss, L G, Siems, U, Graf, M, Pruem, H, Klein, J, Laue, H and Kaster, F (2009). A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy. Strahlentherapie und Onkologie. 185 81
Hayn, M, Beirle, S, Hamprecht, F A, Platt, U, Menze, B H and Wagner, T (2009). Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model. Atmospheric Chemistry and Physics. 9 9367-9398PDF icon Technical Report (2.52 MB)
Jäger, M, Kiel, A, Herten, D - P and Hamprecht, F A (2009). Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process. ChemPhysChem. 10:14 2486-2495
Ozlu, N, Monigatti, F, Renard, B Y, Field, C M, Steen, H, Mitchison, T J and Steen, J J (2009). Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics
Kaster, F O, Kelm, B M, Zechmann, C M, Weber, M - A, Hamprecht, F A and Nix, O (2009). Classification of Spectroscopic Images in the DIROlab Environment. World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. Springer. 25/V 252--255PDF icon Technical Report (145.73 KB)
Frank, M, Plaue, M and Hamprecht, F A (2009). Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures. Optical Engineering. 48, 077003PDF icon Technical Report (2.5 MB)
Kelm, B M, Menze, B H, Nix, O, Zechmann, C and Hamprecht, F A (2009). Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge. IEEE Transaction on Medical Imaging. 28:10 1534-1547PDF icon Technical Report (419.8 KB)
Hanselmann, M, Köthe, U, Renard, B Y, Kirchner, M, Heeren, R M A and Hamprecht, F A (2009). Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192PDF icon Technical Report (1.25 MB)
Trittler, S and Hamprecht, F A (2009). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639PDF icon Technical Report (511.23 KB)
Meine, H, Köthe, U and Stelldinger, P (2009). Pixel Approximation Errors in Common Watershed Algorithms. Discrete Geometry for Computer Imagery. Springer. 5810 193-202PDF icon Technical Report (6.5 MB)
Görlitz, L, Menze, B H, Kelm, B M and Hamprecht, F A (2009). Processing Spectral Data. Surface and Interface Analysis. 41 636-644PDF icon Technical Report (4.17 MB)
Kassemeyer, S (2009). Quantification Of Tumour Angiogenesis Using Pattern Recognition. University of Heidelberg
Andres, B, Köthe, U, Bonea, A, Nadler, B and Hamprecht, F A (2009). Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times. Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings. Springer. 5748 502-511PDF icon Technical Report (3.08 MB)
Staudacher, M, Hamprecht, F A and Görlitz, L (2009). Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von RasterelektronenmikroskopenPDF icon Technical Report (46.64 KB)
Greis, J (2009). Semi-Automatic Analysis Of High-Information-Content Neurobiological Image Data. University of Heidelberg
Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras. Optical Engineering. 48, 013602PDF icon Technical Report (2.03 MB)
Hanselmann, M, Köthe, U, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2009). Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567PDF icon Technical Report (1.47 MB)
Renard, B Y, Kirchner, M, Monigatti, F, Ivanov, A R, Rappsilber, J, Winter, D, Steen, J A, Hamprecht, F A and Steen, H (2009). When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984PDF icon Technical Report (901.78 KB)

2008

Rapp, H, Frank, M, Hamprecht, F A and Jähne, B (2008). A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras. Int. J. Intelligent Systems Technologies and Applications. 5 402-413PDF icon Technical Report (798.23 KB)
Voss, B (2008). Alignment And Retention Time Correction Of Lc-Ms Data In Proteomics. University of Heidelberg
Kirchner, M (2008). Analysis of Spectral Data. University of Heidelberg
Hanselmann, M, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2008). Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658PDF icon Technical Report (3.91 MB)
Steen, J, Steen, H, Georgi, A, Parker, K, Springer, M, Kirchner, M, Hamprecht, F A and Kirschner, M W (2008). Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074PDF icon Technical Report (173.02 KB)
Staudacher, M, Hamprecht, F A and Görlitz, L (2008). Method for processing an intensity image of a microscopePDF icon Technical Report (39.81 KB)
Menze, B H, Kelm, B M, Weber, M - A, Bachert, P and Hamprecht, F A (2008). Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI. Magnetic Resonance in Medicine. 59 1457-1466PDF icon Technical Report (1.45 MB)
Renard, B Y, Kirchner, M, Steen, H, Steen, J A J and Hamprecht, F A (2008). NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355PDF icon Technical Report (643.89 KB)
Garbe, C S, Krajsek, K, Pavlov, P, Andres, B, Mühlich, M, Stuke, I, Mota, C, Böhme, M, Haker, M, Schuchert, T, Scharr, H, Aach, T and Barth, E (2008). Nonlinear Analysis of Multi-Dimensional Signals. Mathematical Methods in Signal Processing and Digital Image Analysis. Springer. 231-288PDF icon Technical Report (7.11 MB)
Griessinger, M (2008). Oject Detection With Generic Features: An Application To Sted Microscopy. University of Heidelberg
Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6PDF icon Technical Report (1.58 MB)
Sauer, P (2008). Pattern Recognition On Statistically Textured Surfaces. University of Heidelberg
Boppel, S (2008). Peak Identification For Liquid Chromatography And Mass Spectrometry. University of Heidelberg
Jäger, M and Hamprecht, F A (2008). Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes. IEEE Transactions on Industrial Electronics. 56:4 1307-1313
Köthe, (2008). Reliable Low-Level Image Analysis. Habilitation thesis. Department Informatik, University of Hamburg, HamburgPDF icon Technical Report (12.44 MB)
König, T, Menze, B H, Kirchner, M, Monigatti, F, Parker, K C, Patterson, T, J. Steen, J, Hamprecht, F A and Steen, H (2008). Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717PDF icon Technical Report (1.16 MB)
Andres, B, Köthe, U, Helmstaedter, M, Denk, W and Hamprecht, F A (2008). Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification. Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings. Springer. 5096 142-152PDF icon Technical Report (1.21 MB)
Jäger, M, Humbert, S and Hamprecht, F A (2008). Sputter Tracking for the Automatic Monitoring of Industrial Laser Welding Processes. IEEE Transactions on Industrial Electronics. 55 2177-2184PDF icon Technical Report (1.83 MB)
Jäger, M, Knoll, C and Hamprecht, F A (2008). Weakly Supervised Learning of a Classifier for Unusual Event Detection. IEEE Transactions on Image Processing. 17 1700-1708PDF icon Technical Report (295.32 KB)

2007

Kirchner, M, Saussen, B, Steen, H, Steen, J A J and Hamprecht, F A (2007). amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R. Journal of Statistical Software. 18 1-12. http://www.jstatsoft.org/v18/i04/paper
Renard, B Y (2007). An Improved Method For Peak Identification In Proteomic Mass Spectrometry Data. University of Heidelberg
Kelm, B M, Menze, B H, Zechmann, C M, Baudendistel, K T and Hamprecht, F A (2007). Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification. Magnetic Resonance in Medicine. 57 150-159PDF icon Technical Report (348.05 KB)
Menze, B H and Ur, J A (2007). Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East. Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland. International Archives of the Photogrammetry, Remote Sensing and Spatial Information SciencesPDF icon Technical Report (920.71 KB)
Weber, C, Zechmann, C M, Kelm, B M, Zamecnik, R, Hendricks, D, Waldherr, R, Hamprecht, F A, Delorme, S, Bachert, P and Ikinger, U (2007). Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer. Der Urologe. 46 1252
Kelm, B M (2007). Evaluation of Vector-Valued Clinical Image Data Using Probabilistic Graphical Models: Quantification and Pattern Recognition. University of HeidelbergPDF icon Technical Report (4.89 MB)
Menze, B H, Kelm, B M and Hamprecht, F A (2007). From eigenspots to fisherspots -- latent spaces in the nonlinear detection of spot patterns in a highly variable background. Advances in data analysis. Springer. 33 255-262PDF icon Technical Report (248.87 KB)
Schmähling, J and Hamprecht, F A (2007). Generalizing the Abbott-Firestone curve by two new surface descriptors. Wear. 262 1360-1371PDF icon Technical Report (877.34 KB)
Frank, M (2007). Investigation Of A 3D Camera. University of Heidelberg
Andres, B (2007). Model Selection In Optical Flow-Based Motion Estimation By Means Of Residual Analysis. University of Heidelberg
Görlitz, (2007). Modern Concepts for Semi-Supervised Learning and Multidimensional Image Processing. University of Heidelberg
Menze, B H, Petrich, W and Hamprecht, F A (2007). Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy. Analytical and Bioanalytical Chemistry. 387 1801-1807PDF icon Technical Report (283.47 KB)
Menze, B (2007). Pattern Recognition in the Quantitative Analysis of Vector-Valued Image Data: Diagnostic Systems and Applications. University of Heidelberg
(2007). Pattern Recognition, 29Th Dagm Symposium, Heidelberg, Germany, September 12-14, 2007, Proceedings. Springer
Trittler, S (2007). Processing of Interferometric Data. University of Heidelberg
König, (2007). Quality Control In Mass Spectrometry. University of Heidelberg
Saussen, B (2007). Retention Time Domain Registration Of Liquid Chromatography/mass Spectrometry Data. University of Heidelberg
Görlitz, L, Singh, M and Schützbach, P (2007). Schnelle 3D-Vermessung von Partikeln in Rasterelektronenmiskroskopen mit Hilfe eines Rücksteuerdetektors
Andres, B, Hamprecht, F A and Garbe, C S (2007). Selection of Local Optical Flow Models by Means of Residual Analysis. Pattern Recognition. Springer. 4713 72-81PDF icon Technical Report (229.64 KB)
Görlitz, L, Menze, B H, Weber, M - A and Kelm, B M (2007). Semi-Supervised Tumor Detection in MRSI With Discriminative Random Fields. Pattern Recognition. Springer. 4713 224-233PDF icon Technical Report (872.46 KB)
Hayn, M (2007). Statistical Analysis Of Spatio-Temporal Patterns In Global Nox Satellite Data. University of Heidelberg
Jäger, (2007). Time Series Analysis and Classification with State-Space Models for Industrial Processes and the Life Sciences. University of Heidelberg
Menze, B H, Muehl, S and Sherratt, A G (2007). Virtual Survey on North Mesopotamian Tell Sites by Means of Satellite Remote Sensing. Broadening Horizons: Multidisciplinary Approaches to Landscape Study. Cambridge Scholars Publishing. 5-29PDF icon Technical Report (1.2 MB)

2006

Sieg, S, Stutz, B, Schmidt, T, Hamprecht, F A and Maier, W F (2006). A QCAR-approach to materials modelling. Journal of Molecular Modeling. 12 611-619PDF icon Technical Report (343.11 KB)
Schmähling, J, Hamprecht, F A and Hoffmann, D M P (2006). A three-dimensional measure of surface roughness based on mathematical morphology. International Journal of Machine Tools and Manufacture. 46 (14) 1764-1769PDF icon Technical Report (524.97 KB)
Kelm, B M, Müller, N, Menze, B H and Hamprecht, F A (2006). Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM. Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis). IEEE Computer Society. 96-103PDF icon Technical Report (232.69 KB)
Zechmann, C, Kelm, B M, Zamecnik, P, Ikinger, U, Waldherr, R, Röll, S, Delorme, S, Hamprecht, F A and Bachert, P (2006). Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients. Proceedings of the 16th ISMRMPDF icon Technical Report (664.38 KB)
Kelm, B M, Menze, B H, Neff, T, Zechmann, C M and Hamprecht, F A (2006). CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.. Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen. Springer. 51-55. http://www.efmi-wg-mip.net/service/bvm2006PDF icon Technical Report (275.25 KB)
Carlsohn, M F, Menze, B H, Kelm, B M, Hamprecht, F A, Kercek, A, Leitner, R and Polder, G (2006). Color image processing. CRC Press. 7(17) 393-419
Kelm, B M, Pal, C and McCallum, A (2006). Combining Generative and Discriminative Methods for Pixel Classification with Multi-Conditional Learning.. ICPR 2006. 2 828-832PDF icon Technical Report (114.99 KB)
Hader, S (2006). Data Mining auf multidimensionalen und komplexen Daten in der industriellen Bildverarbeitung. University of Heidelberg
Menze, B H, Ur, J A and Sherratt, A G (2006). Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model. Photgrammetric Engineering & Remote Sensing. 3 321-327PDF icon Technical Report (643.89 KB)
Lerch, K (2006). Discontinuity Preserving Filtering Of Spectral Images. University of Heidelberg
Lichy, M P, Bachert, P, Hamprecht, F A, Weber, M - A, Debus, J, Schulz-Ertner, D, Kauczor, H - U and Schlemmer, H - P (2006). Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren. Zeitung für Röntgenforschung. 178 627-633
Menze, B H, Kelm, B M, Heck, D, Lichy, M P and Hamprecht, F A (2006). Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images. Bildverarbeitung für die Medizin. 31-36PDF icon Technical Report (672.84 KB)
Menze, B H, Lichy, M P, Bachert, P, Kelm, B M, Schlemmer, H P and Hamprecht, F A (2006). Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor. NMR in Biomedicine. 19 599-609PDF icon Technical Report (289.77 KB)
Wieler, M (2006). Single Tone Frequency Estimation From Very Few Sampling Points. University of Heidelberg
Schmähling, (2006). Statistical characterization of technical surface microstructure. University of Heidelberg
Görlitz, L, Hamprecht, F A and Staudacher, M (2006). Zuordnung von Partikeln zu Entstehungsprozessen

2005

Kelm, B M, Menze, B H and Hamprecht, F A (2005). Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen. VDI-Berichte. 1883 457-466PDF icon Technical Report (221.54 KB)
Jäger, M, Knoll, C and Hamprecht, F A (2005). Automatisierte Klassifikation von Laserschwei\DFprozessen durch Nutzung von 3D Signalverarbeitungs-Algorithmen. Robert Bosch GmbH, Schwieberdingen and IWR, Uni Heidelberg
Hissmann, M (2005). Bayesian Estimation for White Light Interferometry. University of Heidelberg. http://www.ub.uni-heidelberg.de/archiv/5742
Hissmann, M and Hamprecht, F A (2005). Bayesian surface estimation for white light interferometry. Optical Engineering. 44 1-9PDF icon Technical Report (549.46 KB)
Görlitz, L, Hamprecht, F A and Staudacher, M (2005). Detektion von Partikeln in Intensitätsbildern mit Hilfe eines morphologischen Skalenraumes. Robert-Bosch GmbH, University of Heidelberg
König, T, Hamprecht, F A and Kücherer, H (2005). On The Application Of Multiscale Motion Estimation In Intravascular Elastography. University of Heidelberg
Künsch, H R, Agrell, E and Hamprecht, F A (2005). Optimal lattices for sampling. IEEE Transactions on Information Theory. 51 634-647
Humbert, S (2005). Partikel-Verfolgung Beim Laserschwei\dfen Mit Dem Kalman-Filter. University of Heidelberg
Zhang, H, Hamprecht, F A and Amann, A (2005). Report about VOCs Dataset's Analysis based on Random Forests. Proceedings of the HPC-Asia05. IEEE Computer Society Press. 603-607PDF icon Technical Report (232.13 KB)
Menze, B H, Ur, J A and Sherratt, A G (2005). Tell Spotting - Surveying Near Eastern Settlement Mounds from Space. Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy. 217-223PDF icon Technical Report (2.53 MB)
Strobel, J, Görlitz, L and Staudacher, M (2005). Verfahren und Prüfkörper zur Bestimmung der Reinigungswirkung in einem Ultraschallbild

2004

Hamprecht, F A (2004). Classification. Practical Handbook on Image Processing for Scientific and Technical Applications. CRC Press. 509-519PDF icon Technical Report (320.84 KB)
Menze, B H, Wormit, M, Bachert, P, Lichy, M P, Schlemmer, H - P and Hamprecht, F A (2004). Classification of in vivo magnetic resonance spectra. Classification in ubiquitous challenge: Proceedings of the GfKl 2004. Springer. 362-369PDF icon Technical Report (240.1 KB)
Menze, B H (2004). Klassifikation Von Magnetresonanzspektren. University of Heidelberg
Restle, J, Hissmann, M and Hamprecht, F A (2004). Nonparametric Smoothing of Height maps using ``Confidence'' values. Optical Engineering. 43 866-871PDF icon Technical Report (1.07 MB)
Heck, D (2004). Proximity Graphs For Nonlinear Dimension Reduction. University of Heidelberg
Kirchner, M (2004). Spatial Extensions To Self-Modeling Curve Resolution. University of Heidelberg
Feistner, L (2004). Statistische Karten In Der Magnetresonanzspektroskopie. University of Heidelberg
Hader, S and Hamprecht, F A (2004). Two-Stage Classification with Automatic Feature Selection for an Industrial Application. Classification, the ubiquitous challenge: Proceedings of GfKl 2004. Springer. 137-144PDF icon Technical Report (518.16 KB)
Hamprecht, F A and Jähne, B (2004). Vom Bild zur Information. Ruperto Carola -- Forschungsmagazin der Universität Heidelberg. 03.2004 9-12

2003

Eisele, H and Hamprecht, F A (2003). A new approach for defect detection in X-ray CT images. Pattern Recognition. Springer. 2449 345-352PDF icon Technical Report (398.88 KB)
Hissmann, M and Hamprecht, F A (2003). Bayessche Schätzung von Höhenkarten aus der Wei\DF licht-Interferometrie. Oberflächenmesstechnik 2003. 187--196
Hader, S and Hamprecht, F A (2003). Efficient Density Clustering. Between Data Science and Applied Data Analysis. Springer. 39-48
Hamprecht, F A and Agrell, E (2003). Exploring a space of materials: spatial sampling design and subset selection. Experimental Design for Combinatorial and High Throughput Materials Development. WileyPDF icon Technical Report (2.28 MB)
Restle, J (2003). Optimierung der Wei\DFlichtinterferometrie für Applikationen der industriellen Qualitätskontrolle. University of Heidelberg
Hader, S (2003). System Concept for Image Sequence Classification in Laser Welding. Pattern Recognition. Springer. 2781 212-219

2002

Gee, P J, Hamprecht, F A, Schuler, L D, van Gunsteren, W F, Duchardt, E, Schwalbe, H, Albert, M and Seebach, D (2002). A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution. Helv. Chim. Acta. 85 618-632
Eisele, H (2002). Automated defect detection and evaluation in X-ray CT images. University of Heidelberg. www.ub.uni-heidelberg.de/archiv/3106
Hamprecht, F A, Thiel, W and van Gunsteren, W F (2002). Chemical library subset selection algorithms: a unified derivation using spatial statistics. Journal of Chemical Information and Computer Sciences. 42 414-428
Jähne, B, Brocke, M, Eisele, H, Hader, S, Hamprecht, F A, Happold, W, Raisch, F and Restle, J (2002). Für Anspruchsvolle - Multidimensionale Bildverarbeitung in der Produktion. Qualität und Zuverlässigkeit. 47 1154-1159

2001

Hamprecht, F A, Peter, C, Daura, X, Thiel, W and van Gunsteren, W F (2001). A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization. Journal of Chemical Physics. 114 2079-2089
Hamprecht, F A, Achleitner, U, Krismer, A C, Lindner, K H, Wenzel, V, Strohmenger, H - U, Thiel, W and van Gunsteren, W F (2001). Fibrillation power: An alternative method of ECG spectral analysis for prediction of countershock success in a porcine model of ventricular fibrillation. Resuscitation. 50 287-296
Restle, J (2001). Horizontal scannendes Wei\DFlicht-Interferometer. Robert Bosch GmbH
Hamprecht, F A, Jost, D, Rüttimann, M, Calamai, F and Kowalski, J J (2001). Preliminary results on the prediction of countershock success with fibrillation power. Resuscitation. 50 297-299

1998

Hamprecht, F A, Cohen, A J, Tozer, D J and Handy, N C (1998). Development and assessment of new exchange-correlation functionals. Journal of Chemical Physics. 109 6264-6271
Bühl, M and Hamprecht, F A (1998). Theoretical Investigation of NMR Chemical Shifts and Reactivities of Oxovanadium (V) Compounds. Journal of Computational Chemistry. 19 113-122
Kubinyi, H, Hamprecht, F A and Mietzner, T (1998). Threedimensional Quantitative Similarity-Activity Relationships (3DQSiAR) from SEAL Similarity Matrices. Journal of Medicinal Chemistry. 41 2553-2564

1997

Hamprecht, F A, Scott, W R P and van Gunsteren, W F (1997). Generation of pseudo-native protein structures for threading. Proteins. 28 522-529