Publications
amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R. Journal of Statistical Software. 18 1-12. http://www.jstatsoft.org/v18/i04/paper
(2007). Analysis of Spectral Data. University of Heidelberg
(2008). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131
Technical Report (3.22 MB)
(2010). 
Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83
Technical Report (380.19 KB)
(2010). 
Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658
Technical Report (3.91 MB)
(2008). 
Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541
Technical Report (518.01 KB)
(2010). 
Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074
Technical Report (173.02 KB)
(2008). 
Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318
Technical Report (619.11 KB)
(2010). 
MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763
Technical Report (125.18 KB)
(2010). 
Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192
Technical Report (1.25 MB)
(2009). 
NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355
Technical Report (643.89 KB)
(2008). 
Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11
Technical Report (444.6 KB)
(2012). 
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717
Technical Report (1.16 MB)
(2008). 
SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993
Technical Report (2.2 MB)
(2011). 
Spatial Extensions To Self-Modeling Curve Resolution. University of Heidelberg
(2004). Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567
Technical Report (1.47 MB)
(2009). 
When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984
Technical Report (901.78 KB)
(2009). 