Publications
Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11
Technical Report (444.6 KB)
(2012). 
SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993
Technical Report (2.2 MB)
(2011). 
Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131
Technical Report (3.22 MB)
(2010). 
Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83
Technical Report (380.19 KB)
(2010). 
Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541
Technical Report (518.01 KB)
(2010). 
Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318
Technical Report (619.11 KB)
(2010). 
MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763
Technical Report (125.18 KB)
(2010). 
Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192
Technical Report (1.25 MB)
(2009). 
Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567
Technical Report (1.47 MB)
(2009). 
When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984
Technical Report (901.78 KB)
(2009). 
Analysis of Spectral Data. University of Heidelberg
(2008). Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658
Technical Report (3.91 MB)
(2008). 
Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis. Proceedings of the National Academy of Sciences. 105 6069-6074
Technical Report (173.02 KB)
(2008). 
NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355
Technical Report (643.89 KB)
(2008). 
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717
Technical Report (1.16 MB)
(2008). 
amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R. Journal of Statistical Software. 18 1-12. http://www.jstatsoft.org/v18/i04/paper
(2007). Spatial Extensions To Self-Modeling Curve Resolution. University of Heidelberg
(2004).