All Publications

2010
Kausler, B X (2010). Modeling Of Spectral Peaks For Mass-Spectrometry-Based Proteomics. Universities of Karlsruhe and Heidelberg Google Scholar BibTeX RTF EndNote XML
Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (380.19 KB)
Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (125.18 KB)
Kröger, (2010). Exploratory And Computational Analysis Of Huge Volume Images For Connectomics. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (3.22 MB)
Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (518.01 KB)
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (481.58 KB)
Nair, R (2010). Construction And Analysis Of Random Tree Ensembles. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Renard, B Y (2010). Robust Methods for the Proteomic Data Analysis Pipeline. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (619.11 KB)
Riedl, M (2010). Using Protein Identification Data To Improve Mass Spectrometry Feature Extraction. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Scheelen, C (2010). Automated Quality Control In The Life Sciences. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Sommer, C (2010). Interactive Learning for the Analysis of Biomedical and Industrial Imagery. University of Heidelberg Google Scholar BibTeX RTF EndNote XML

2009
Andres, B, Köthe, U, Bonea, A, Nadler, B and Hamprecht, F A (2009). Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times. Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings. Springer. 5748 502-511 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (3.08 MB)
Frank, M, Plaue, M and Hamprecht, F A (2009). Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures. Optical Engineering. 48, 077003 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.5 MB)
Görlitz, L, Hamprecht, F A and Staudacher, M (2009). Allocation of particles to development processes. Patent Google Scholar BibTeX RTF EndNote XML Technical Report (406.7 KB)
Görlitz, L, Menze, B H, Kelm, B Michael and Hamprecht, F A (2009). Processing Spectral Data. Surface and Interface Analysis. 41 636-644 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (4.17 MB)
Greis, J (2009). Semi-Automatic Analysis Of High-Information-Content Neurobiological Image Data. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Hanselmann, M, Köthe, U, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2009). Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.47 MB)
Hanselmann, M, Köthe, U, Renard, B Y, Kirchner, M, Heeren, R M A and Hamprecht, F A (2009). Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.25 MB)
Hayn, M, Beirle, S, Hamprecht, F A, Platt, U, Menze, B H and Wagner, T (2009). Analysing spatio-temporal patterns of the global NO₂-distribution retrieved frome GOME satellite observations using a generalized additive model. Atmospheric Chemistry and Physics. 9 9367-9398 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.52 MB)
Jäger, M, Kiel, A, Herten, D - P and Hamprecht, F A (2009). Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process. ChemPhysChem. 10:14 2486-2495 DOI Google Scholar BibTeX RTF EndNote XML
Kassemeyer, S (2009). Quantification Of Tumour Angiogenesis Using Pattern Recognition. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Kelm, B Michael, Zechmann, C M, Weber, M - A, Hamprecht, F A and Nix, O (2009). Classification of Spectroscopic Images in the DIROlab Environment. World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. Springer. 25/V 252--255 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (145.73 KB)
Kelm, B Michael, Menze, B H, Nix, O, Zechmann, C M and Hamprecht, F A (2009). Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge. IEEE Transaction on Medical Imaging. 28:10 1534-1547 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (419.8 KB)
Meine, H, Köthe, U and Stelldinger, P (2009). Pixel Approximation Errors in Common Watershed Algorithms. Discrete Geometry for Computer Imagery. Springer. 5810 193-202 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (6.5 MB)
Menze, B H, Kelm, B Michael, Masuch, R, Himmelreich, U, Bachert, P, Petrich, W and Hamprecht, F A (2009). A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data. BMC Bioinformatics. 10:213 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (675 KB)
Ozlu, N, Monigatti, F, Renard, B Y, Field, C M, Steen, H, Mitchison, T J and Steen, J J (2009). Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics DOI Google Scholar BibTeX RTF EndNote XML
Renard, B Y, Kirchner, M, Monigatti, F, Ivanov, A R, Rappsilber, J, Winter, D, Steen, J A J, Hamprecht, F A and Steen, H (2009). When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing. Proteomics. 9 4978-4984 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (901.78 KB)
Staudacher, M, Hamprecht, F A and Görlitz, L (2009). Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen. Patent, Patent Number WO2009062781A1 Google Scholar BibTeX RTF EndNote XML Technical Report (46.64 KB)
Thieke, C, Nix, O, Koehn, A, Floca, R, van Straaten, D, Hahn, H, Strauss, L G, Siems, U, Graf, M, Pruem, H, Klein, J, Laue, H and Kaster, F O (2009). A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy. Strahlentherapie und Onkologie. 185 81 Google Scholar BibTeX RTF EndNote XML
Trittler, S and Hamprecht, F A (2009). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (511.23 KB)
Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras. Optical Engineering. 48, 013602 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.03 MB)

2008
Andres, B, Köthe, U, Helmstaedter, M, Denk, W and Hamprecht, F A (2008). Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification. Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings. Springer. 5096 142-152 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.21 MB)
Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.58 MB)
Boppel, S (2008). Peak Identification For Liquid Chromatography And Mass Spectrometry. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Garbe, C S, Krajsek, K, Pavlov, P, Andres, B, Mühlich, M, Stuke, I, Mota, C, Böhme, M, Haker, M, Schuchert, T, Scharr, H, Aach, T and Barth, E (2008). Nonlinear Analysis of Multi-Dimensional Signals. Mathematical Methods in Signal Processing and Digital Image Analysis. Springer. 231-288 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (7.11 MB)
Griessinger, M (2008). Oject Detection With Generic Features: An Application To Sted Microscopy. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Hanselmann, M, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2008). Concise Representation of MS Images by Probabilistic Latent Semantic Analysis. Analytical Chemistry. 80 9649-9658 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (3.91 MB)
Jäger, M and Hamprecht, F A (2008). Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes. IEEE Transactions on Industrial Electronics. 56:4 1307-1313 DOI Google Scholar BibTeX RTF EndNote XML

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2010

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2008

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