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L

Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2012). The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models. ECCV 2012

Technical Report (532.64 KB)

Andres, B, Kappes, J Hendrik, Beier, T, Köthe, U and Hamprecht, F A (2012). The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models. ECCV 2012

Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2012). The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12

Technical Report (446.28 KB)

K

Straehle, C N, Peter, S, Köthe, U and Hamprecht, F A (2013). K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384

Technical Report (1.18 MB)

I

Krasowski, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2015). Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539

Technical Report (2.25 MB)

Berg, S, Kutra, D, Kroeger, T, Straehle, C N, Kausler, B X, Haubold, C, Schiegg, M, Ales, J, Beier, T, Rudy, M, Eren, K, Cervantes, J I, Xu, B, Beuttenmüller, F, Wolny, A, Zhang, C, Köthe, U, Hamprecht, F A and Kreshuk, A (2019). ilastik: interactive machine learning for (bio)image analysis. Nature Methods. 16 1226-1232

Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233

Kleesiek, J, Biller, A, Urban, G, Köthe, U, Bendszus, M and Hamprecht, F A (2014). ilastik for Multi-modal Brain Tumor Segmentation. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace. 12-17

Technical Report (405.91 KB)

H

Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215

Technical Report (1.44 MB)

G

Ardizzone, L, Lüth, C, Kruse, J, Rother, C and Köthe, U (2019). Guided Image Generation with Conditional Invertible Neural Networks. http://arxiv.org/abs/1907.02392

Ardizzone, L, Lüth, C, Kruse, J, Rother, C and Köthe, U (2019). Guided Image Generation with Conditional Invertible Neural Networks. http://arxiv.org/abs/1907.02392

Schiegg, M, Hanslovsky, P, Haubold, C, Köthe, U, Hufnagel, L and Hamprecht, F A (2015). Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell. Bioinformatics. 31 948-956. http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref&ijkey=mTXWsiFrci7R8tc

Technical Report (534.29 KB)

Andres, B, Kröger, T, Briggmann, K L, Denk, W, Norogod, N, Knott, G W, Köthe, U and Hamprecht, F A (2012). Globally Optimal Closed-Surface Segmentation for Connectomics. ECCV 2012. Proceedings, Part 3. 778-791

Technical Report (2.72 MB)

Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26

Technical Report (1.43 MB)

Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26

Technical Report (1.43 MB)

F

Bähnisch, C, Stelldinger, P and Köthe, U (2009). Fast and Accurate 3D Edge Detection for Surface Reconstruction. Pattern Recognition. Springer. 5748 111-120

E

Ardizzone, L, Mackowiak, R, Rother, C and Köthe, U (2020). Exact Information Bottleneck with Invertible Neural Networks: Getting the Best of Discriminative and Generative Modeling. http://arxiv.org/abs/2001.06448

PDF (2.87 MB)

Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6

Technical Report (1.58 MB)

Andres, B, Kappes, J H, Köthe, U, Schnörr, C and Hamprecht, F A (2010). An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM. Pattern Recognition, Proc.~32th DAGM Symposium. 353-362

Andres, B, Kappes, J H, Köthe, U, Schnörr, C and Hamprecht, F A (2010). An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM. Pattern Recognition, Proc.~32th DAGM Symposium

Technical Report (218.43 KB)

Beier, T, Andres, B, Köthe, U and Hamprecht, F A (2016). An Efficient Fusion Move Algorithm for the Minimum Cost Lifted Multicut Problem. ECCV. Proceedings. Springer. LNCS 9906 715-730

Technical Report (4.89 MB)

D

Kausler, B X, Schiegg, M, Andres, B, Lindner, M, Köthe, U, Leitte, H, Wittbrodt, J, Hufnagel, L and Hamprecht, F A (2012). A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness. ECCV 2012. Proceedings. 7574 144-157

Technical Report (809.07 KB)

Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541

Technical Report (518.01 KB)

Lou, X, Kaster, F O, Lindner, M, Kausler, B X, Köthe, U, Höckendorf, B, Wittbrodt, J, Jänicke, H and Hamprecht, F A (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560

Technical Report (1.44 MB)

C

Beier, T, Kröger, T, Kappes, J H, Köthe, U and Hamprecht, F A (2014). Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning. 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014. http://dx.doi.org/10.1109/CVPR.2014.17

Technical Report (10.06 MB)

Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83

Technical Report (380.19 KB)

Straehle, C N, Köthe, U, Knott, G W and Hamprecht, F A (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660

Technical Report (1.69 MB)

B

Kruse, J, Ardizzone, L, Rother, C and Köthe, U (2019). Benchmarking Invertible Architectures On Inverse Problems

A

Kreshuk, A, Walecki, R, Köthe, U, Gierthmühlen, M, Plachta, D, Genoud, C, Haastert-Talini, K and Hamprecht, F A (2015). Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves. Journal of Microscopy. 259 (2) 143-154

Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Knott, G W and Hamprecht, F A (2011). Automated Segmentation of Synapses in 3D EM Data. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011). Proceedings. 220-223

Kreshuk, A, Köthe, U, Pax, E, Bock, D D and Hamprecht, F A (2014). Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2

Technical Report (16.66 MB)

Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)

Technical Report (290.48 KB)

Kröger, T, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2014). Asymmetric Cuts: Joint Image Labeling and Partitioning. Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings. http://dx.doi.org/10.1007/978-3-319-11752-2_16

Technical Report (3.46 MB)

Hanselmann, M, Röder, J, Köthe, U, Renard, B Y, Heeren, R M A and Hamprecht, F A (2012). Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images. Analytical Chemistry. 85 (1) 147-155

Technical Report (2.58 MB)

3

Andres, B, Köthe, U, Kröger, T, Helmstaedter, M, Briggmann, K L, Denk, W and Hamprecht, F A (2012). 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis. 16 (2012) 796-805

Technical Report (20.85 MB)

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