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2012

Fiaschi, L, Nair, R, Köthe, U and Hamprecht, F A (2012). Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688

Technical Report (3.66 MB)

Lou, X, Fiaschi, L, Köthe, U and Hamprecht, F A (2012). Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183

Technical Report (4.15 MB)

Straehle, C N, Köthe, U, Briggman, K, Denk, W and Hamprecht, F A (2012). Seeded watershed cut uncertainty estimators for guided interactive segmentation. CVPR 2012. Proceedings. 765 - 772

Technical Report (2.84 MB)

2011

Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10)

Technical Report (290.48 KB)

Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Knott, G W and Hamprecht, F A (2011). Automated Segmentation of Synapses in 3D EM Data. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011). Proceedings. 220-223

Straehle, C N, Köthe, U, Knott, G W and Hamprecht, F A (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660

Technical Report (1.69 MB)

Lou, X, Kaster, F O, Lindner, M, Kausler, B X, Köthe, U, Höckendorf, B, Wittbrodt, J, Jänicke, H and Hamprecht, F A (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560

Technical Report (1.44 MB)

Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233

Menze, B H, Kelm, B Michael, Splitthoff, N, Köthe, U and Hamprecht, F A (2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469

Technical Report (665.33 KB)

Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. Proceedings of ICCV

Technical Report (2.95 MB)

Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. Proceedings of ICCV

Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. ICCV, Proceedings. 2611 - 2618

Technical Report (8.18 MB)

Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993

Technical Report (2.2 MB)

2010

Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83

Technical Report (380.19 KB)

Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541

Technical Report (518.01 KB)

Andres, B, Kappes, J H, Köthe, U, Schnörr, C and Hamprecht, F A (2010). An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM. Pattern Recognition, Proc.~32th DAGM Symposium

Technical Report (218.43 KB)

Andres, B, Kappes, J H, Köthe, U, Schnörr, C and Hamprecht, F A (2010). An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM. Pattern Recognition, Proc.~32th DAGM Symposium. 353-362

Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26

Technical Report (1.43 MB)

Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26

Technical Report (1.43 MB)

Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215

Technical Report (1.44 MB)

Andres, B, Kappes, J H, Köthe, U and Hamprecht, F A (2010). The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102

Technical Report (625.06 KB)

Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x. ArXiv e-prints. http://arxiv.org/abs/1008.2909v1

Technical Report (415.54 KB)

2009

Bähnisch, C, Stelldinger, P and Köthe, U (2009). Fast and Accurate 3D Edge Detection for Surface Reconstruction. Pattern Recognition. Springer. 5748 111-120

Hanselmann, M, Köthe, U, Renard, B Y, Kirchner, M, Heeren, R M A and Hamprecht, F A (2009). Multivariate Watershed Segmentation of Compositional Data. Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press. Springer. 5810 180-192

Technical Report (1.25 MB)

Meine, H, Köthe, U and Stelldinger, P (2009). Pixel Approximation Errors in Common Watershed Algorithms. Discrete Geometry for Computer Imagery. Springer. 5810 193-202

Meine, H, Köthe, U and Stelldinger, P (2009). Pixel Approximation Errors in Common Watershed Algorithms. Discrete Geometry for Computer Imagery. Springer. 5810 193-202

Technical Report (6.5 MB)

Andres, B, Köthe, U, Bonea, A, Nadler, B and Hamprecht, F A (2009). Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times. Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings. Springer. 5748 502-511

Technical Report (3.08 MB)

Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and experimental error analysis of continuous-wave time-of-flight range cameras. Opt. Eng. 48 013602

Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras. Optical Engineering. 48, 013602

Technical Report (2.03 MB)

Hanselmann, M, Köthe, U, Kirchner, M, Renard, B Y, Amstalden, E R, Glunde, K, Heeren, R M A and Hamprecht, F A (2009). Towards Digital Staining using Imaging Mass Spectrometry and Random Forests. Journal of Proteome Research. 8 3558-3567

Technical Report (1.47 MB)

2008

Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6

Technical Report (1.58 MB)

Köthe, (2008). Reliable Low-Level Image Analysis. Habilitation thesis. Department Informatik, University of Hamburg, Hamburg

Technical Report (12.44 MB)

Andres, B, Köthe, U, Helmstaedter, M, Denk, W and Hamprecht, F A (2008). Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification. Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings. Springer. 5096 142-152

Technical Report (1.21 MB)

Meine, H, Köthe, U and Stelldinger, P (2008). A Topological Sampling Theorem for Robust Boundary Reconstruction and Image Segmentation. Discrete Applied Mathematics. 157 524-541

Köthe, (2008). What Can We Learn from Discrete Images about the Continuous World. Discrete Geometry for Computer Imagery. Springer. 4992 4-19

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