Publications
2015
Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015).
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems.
International Journal of Computer Vision.
115 155–184
Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015).
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems.
International Journal of Computer Vision.
115 155–184
Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015).
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems.
International Journal of Computer Vision.
115 155–184.
http://hci.iwr.uni-heidelberg.de/opengm2/ Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015).
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems.
Int.~J.~Comp.~Vision Technical Report (5.12 MB) Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2015).
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems.
International Journal of Computer Vision. 1-30
Technical Report (1.5 MB) Schiegg, M, Hanslovsky, P, Haubold, C, Köthe, U, Hufnagel, L and Hamprecht, F A (2015).
Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell.
Bioinformatics.
31 948-956.
http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref&ijkey=mTXWsiFrci7R8tc Technical Report (534.29 KB) Krasowski, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2015).
Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors.
12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. 536-539
Technical Report (2.25 MB) Schiegg, M, Heuer, B, Haubold, C, Wolf, S, Köthe, U and Hamprecht, F A (2015).
Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models.
ISBI. Proceedings. 394-398
Technical Report (648.55 KB) Cali, C, Baghabra, J, Boges, D J, Holst, G R, Kreshuk, A, Hamprecht, F A, Srinivasan, M, Lehväslaiho, H and Magistretti, P J (2015).
Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues.
Journal of Comparative Neurology.
524 23-38
2014
Kröger, T, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2014).
Asymmetric Cuts: Joint Image Labeling and Partitioning.
Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings.
http://dx.doi.org/10.1007/978-3-319-11752-2_16 Technical Report (3.46 MB) Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2014).
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems.
CoRR.
abs/1404.0533.
http://hci.iwr.uni-heidelberg.de/opengm2/ Technical Report (3.32 MB) Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Kim, S, Kausler, B X, Kröger, T, Lellmann, J, Komodakis, N, Savchynskyy, B and Rother, C (2014).
A Comparative Study of Modern Inference Techniques for Structured
Discrete Energy Minimization Problems.
CoRR.
http://arxiv.org/abs/1404.0533 Beier, T, Kröger, T, Kappes, J H, Köthe, U and Hamprecht, F A (2014).
Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning.
2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014.
http://dx.doi.org/10.1109/CVPR.2014.17 Technical Report (10.06 MB) Decker, C and Hamprecht, F A (2014).
Detecting individual body parts improves mouse behavior classification.
Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB), 22nd International Conference on Pattern Recognition (ICPR). Proceedings Technical Report (1.48 MB) Kandemir, M, Rubio, J C, Schmidt, U, Wojek, C, Welbl, J, Ommer, B and Hamprecht, F A (2014).
Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures.
Medical Image Computing and Computer-Assisted Intervention. Springer. 154--161
Technical Report (2 MB) Kandemir, M, Rubio, J C, Schmidt, U, Welbl, J, Ommer, B and Hamprecht, F A (2014).
Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures.
MICCAI. Proceedings. Springer. 154-161
Paper (2 MB) Lindner, R, Lou, X, Reinstein, J, Shoeman, R L, Hamprecht, F A and Winkler, A (2014).
Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation.
Journal of The American Society for Mass Spectrometry.
25 1018-1028
Technical Report (2.1 MB) Kleesiek, J, Biller, A, Urban, G, Köthe, U, Bendszus, M and Hamprecht, F A (2014).
ilastik for Multi-modal Brain Tumor Segmentation.
MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace. 12-17
Technical Report (405.91 KB) Yarkony, J, Beier, T, Baldi, P and Hamprecht, F A (2014).
Parallel Multicut Segmentation via Dual Decomposition.
New Frontiers in Mining Complex Patterns - Third International Workshop, {NFMCP} 2014, Held in Conjunction with {ECML-PKDD} 2014, Nancy, France, September 19, 2014, Revised Selected Papers.
http://dx.doi.org/10.1007/978-3-319-17876-9_4 Maco, B, Cantoni, M, Holtmaat, A, Kreshuk, A, Hamprecht, F A and Knott, G W (2014).
Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites.
Nature Protocols.
9 1354-1366
Technical Report (2.01 MB) Pages