Publications

2011
Wanner, S, Sommer, C, Rocholz, R, Hamprecht, F A and Jähne, B (2011). A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface. 16th International Workshop on Vision, Modelling and Visualization. Eurographics Association, Germany. 199-206 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (4.67 MB)
Lindner, M (2011). A Machine Learning Approach To Improve Digital Embryo Analysis. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Merkel, B, Nix, O and Hamprecht, F A (2011). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Computer Science - Research and Development. 26 65-85 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (808.16 KB)
Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10) DOI Google Scholar BibTeX RTF EndNote XML Technical Report (290.48 KB)
Andres, B (2011). Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Lou, X (2011). Biomedical Data Analysis with Prior Knowledge: Modeling and Learning. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Straehle, C N, Köthe, U, Knott, G W and Hamprecht, F A (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.69 MB)
Kaster, F O, Weber, M - A and Hamprecht, F A (2011). Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. LNCS. Springer, Heidelberg. LNCS 6533 74-85 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (544.56 KB)
Lou, X, Kaster, F O, Lindner, M, Kausler, B X, Köthe, U, Höckendorf, B, Wittbrodt, J, Jänicke, H and Hamprecht, F A (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.44 MB)
Röder, J, Tolosana-Delgado, R and Hamprecht, F A (2011). Gaussian process classification: singly versus doubly stochastic models, and new computational schemes. Stochastic Environmental Research & Risk Assessment. 25 (7) 865-879 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (672.68 KB)
Kappes, J H, Speth, M, Andres, B, Reinelt, G and Schnörr, C (2011). Globally Optimal Image Partitioning by Multicuts. EMMCVPR. Springer. 31-44 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (7.3 MB)
Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233 DOI Google Scholar BibTeX RTF EndNote XML
Kaster, F O (2011). Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Schleicher, J (2011). Image Processing For Super-Resolution Localization Microscopy Utilizing An Fpga Accelerator. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Frank, M and Hamprecht, F A (2011). Image-Based Supervision of a Periodically Working Machine. Pattern Analysis and Applications. 1-10 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (466.61 KB)
Straehle, C N (2011). Interactive Segmentation Of Neural Electron Microscopy Data. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Menze, B H, Kelm, B Michael, Splitthoff, N, Köthe, U and Hamprecht, F A (2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (665.33 KB)
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. ICCV, Proceedings. 2611 - 2618 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (8.18 MB)
Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.2 MB)
Lou, X and Hamprecht, F A (2011). Structured Learning for Cell Tracking. NIPS 2011. Proceedings. 1296-1304 Google Scholar BibTeX RTF EndNote XML Technical Report (1.41 MB)
Kelm, B Michael, Kaster, F O, Henning, A, Weber, M - A, Bachert, P, Bösinger, P, Hamprecht, F A and Menze, B H (2011). Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images. NMR in Biomedicine. 25(1) 1-13 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.94 MB)
Pfannmöller, M, Flügge, H, Benner, G, Wacker, I, Sommer, C, Hanselmann, M, Schmale, S, Schmidt, H, Hamprecht, F A, Rabe, T, Kowalsky, W and Schröder, R (2011). Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy. Nano Letters. 11 3099-3107 DOI Google Scholar BibTeX RTF EndNote XML

2010
Hüsken, (2010). Active And Online Learning For Interactive Image Analysis. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Kassemeyer, S, Merkel, B, Nix, O and Hamprecht, F A (2010). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Bildverarbeitung für die Medizin 2010 -- Algorithmen, Systeme, Anwendungen. Springer. 97-101 Google Scholar BibTeX RTF EndNote XML Technical Report (1.12 MB)
Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (3.22 MB)
Scheelen, C (2010). Automated Quality Control In The Life Sciences. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Hanselmann, M (2010). Computational Methods for the Analysis of Mass Spectrometry Images. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (380.19 KB)
Nair, R (2010). Construction And Analysis Of Random Tree Ensembles. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (518.01 KB)
Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (619.11 KB)
Kröger, (2010). Exploratory And Computational Analysis Of Huge Volume Images For Connectomics. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Börner, K, Hermle, J, Sommer, C, Brown, N P, Knapp, B, Glass, B, Torralba, G, Reymann, J, Beil, N, Beneke, J, Pepperkok, R, Schneider, R and Ludwig, T (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal. 5 39-49 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (556.09 KB)
Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26 Google Scholar BibTeX RTF EndNote XML Technical Report (1.43 MB)
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215 Google Scholar BibTeX RTF EndNote XML Technical Report (1.44 MB)
Sommer, C (2010). Interactive Learning for the Analysis of Biomedical and Industrial Imagery. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (125.18 KB)
Kausler, B X (2010). Modeling Of Spectral Peaks For Mass-Spectrometry-Based Proteomics. Universities of Karlsruhe and Heidelberg Google Scholar BibTeX RTF EndNote XML
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (481.58 KB)
Renard, B Y (2010). Robust Methods for the Proteomic Data Analysis Pipeline. University of Heidelberg Google Scholar BibTeX RTF EndNote XML

Publications

2011

2010

Pages