Publications

2011
Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233 DOI Google Scholar BibTeX RTF EndNote XML
Kaster, F O (2011). Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Schleicher, J (2011). Image Processing For Super-Resolution Localization Microscopy Utilizing An Fpga Accelerator. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Frank, M and Hamprecht, F A (2011). Image-Based Supervision of a Periodically Working Machine. Pattern Analysis and Applications. 1-10 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (466.61 KB)
Straehle, C N (2011). Interactive Segmentation Of Neural Electron Microscopy Data. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Menze, B H, Kelm, B Michael, Splitthoff, N, Köthe, U and Hamprecht, F A (2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (665.33 KB)
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. ICCV, Proceedings. 2611 - 2618 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (8.18 MB)
Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.2 MB)
Lou, X and Hamprecht, F A (2011). Structured Learning for Cell Tracking. NIPS 2011. Proceedings. 1296-1304 Google Scholar BibTeX RTF EndNote XML Technical Report (1.41 MB)
Kelm, B Michael, Kaster, F O, Henning, A, Weber, M - A, Bachert, P, Bösinger, P, Hamprecht, F A and Menze, B H (2011). Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images. NMR in Biomedicine. 25(1) 1-13 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.94 MB)
Pfannmöller, M, Flügge, H, Benner, G, Wacker, I, Sommer, C, Hanselmann, M, Schmale, S, Schmidt, H, Hamprecht, F A, Rabe, T, Kowalsky, W and Schröder, R (2011). Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy. Nano Letters. 11 3099-3107 DOI Google Scholar BibTeX RTF EndNote XML

2010
Hüsken, (2010). Active And Online Learning For Interactive Image Analysis. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Kassemeyer, S, Merkel, B, Nix, O and Hamprecht, F A (2010). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Bildverarbeitung für die Medizin 2010 -- Algorithmen, Systeme, Anwendungen. Springer. 97-101 Google Scholar BibTeX RTF EndNote XML Technical Report (1.12 MB)
Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (3.22 MB)
Scheelen, C (2010). Automated Quality Control In The Life Sciences. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Hanselmann, M (2010). Computational Methods for the Analysis of Mass Spectrometry Images. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (380.19 KB)
Nair, R (2010). Construction And Analysis Of Random Tree Ensembles. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (518.01 KB)
Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (619.11 KB)
Kröger, (2010). Exploratory And Computational Analysis Of Huge Volume Images For Connectomics. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Börner, K, Hermle, J, Sommer, C, Brown, N P, Knapp, B, Glass, B, Torralba, G, Reymann, J, Beil, N, Beneke, J, Pepperkok, R, Schneider, R and Ludwig, T (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal. 5 39-49 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (556.09 KB)
Köthe, U, Andres, B, Kröger, T and Hamprecht, F A (2010). Geometric Analysis of 3D Electron Microscopy Data. Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM). 22-26 Google Scholar BibTeX RTF EndNote XML Technical Report (1.43 MB)
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215 Google Scholar BibTeX RTF EndNote XML Technical Report (1.44 MB)
Sommer, C (2010). Interactive Learning for the Analysis of Biomedical and Industrial Imagery. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (125.18 KB)
Kausler, B X (2010). Modeling Of Spectral Peaks For Mass-Spectrometry-Based Proteomics. Universities of Karlsruhe and Heidelberg Google Scholar BibTeX RTF EndNote XML
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (481.58 KB)
Renard, B Y (2010). Robust Methods for the Proteomic Data Analysis Pipeline. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x. ArXiv e-prints. http://arxiv.org/abs/1008.2909v1 Google Scholar BibTeX RTF EndNote XML Technical Report (415.54 KB)
Andres, B, Kappes, J H, Köthe, U and Hamprecht, F A (2010). The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102 Google Scholar BibTeX RTF EndNote XML Technical Report (625.06 KB)
Riedl, M (2010). Using Protein Identification Data To Improve Mass Spectrometry Feature Extraction. University of Heidelberg Google Scholar BibTeX RTF EndNote XML

2009
Menze, B H, Kelm, B Michael, Masuch, R, Himmelreich, U, Bachert, P, Petrich, W and Hamprecht, F A (2009). A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data. BMC Bioinformatics. 10:213 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (675 KB)
Thieke, C, Nix, O, Koehn, A, Floca, R, van Straaten, D, Hahn, H, Strauss, L G, Siems, U, Graf, M, Pruem, H, Klein, J, Laue, H and Kaster, F O (2009). A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy. Strahlentherapie und Onkologie. 185 81 Google Scholar BibTeX RTF EndNote XML
Görlitz, L, Hamprecht, F A and Staudacher, M (2009). Allocation of particles to development processes. Patent Google Scholar BibTeX RTF EndNote XML Technical Report (406.7 KB)
Hayn, M, Beirle, S, Hamprecht, F A, Platt, U, Menze, B H and Wagner, T (2009). Analysing spatio-temporal patterns of the global NO₂-distribution retrieved frome GOME satellite observations using a generalized additive model. Atmospheric Chemistry and Physics. 9 9367-9398 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.52 MB)
Jäger, M, Kiel, A, Herten, D - P and Hamprecht, F A (2009). Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process. ChemPhysChem. 10:14 2486-2495 DOI Google Scholar BibTeX RTF EndNote XML
Ozlu, N, Monigatti, F, Renard, B Y, Field, C M, Steen, H, Mitchison, T J and Steen, J J (2009). Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics DOI Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Kelm, B Michael, Zechmann, C M, Weber, M - A, Hamprecht, F A and Nix, O (2009). Classification of Spectroscopic Images in the DIROlab Environment. World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. Springer. 25/V 252--255 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (145.73 KB)
Frank, M, Plaue, M and Hamprecht, F A (2009). Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures. Optical Engineering. 48, 077003 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.5 MB)

Publications

2011

2010

2009

Pages