Publications

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Journal Article
Funke, J, Andres, B, Hamprecht, F A, Cardona, A and Cook, M (2012). Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data. CVPR 2012. Proceedings. 1004-1011PDF icon Technical Report (1.64 MB)
Lichy, M P, Bachert, P, Hamprecht, F A, Weber, M - A, Debus, J, Schulz-Ertner, D, Kauczor, H - U and Schlemmer, H - P (2006). Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren. Zeitung für Röntgenforschung. 178 627-633
Hehn, T M, Kooij, J F P and Hamprecht, F A (2019). End-to-End Learning of Decision Trees and Forests. International Journal of Computer Vision. 1-15
Andres, B, Kondermann, C, Kondermann, D, Köthe, U, Hamprecht, F A and Garbe, C S (2008). On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. 1-6PDF icon Technical Report (1.58 MB)
Kelm, B Michael, Menze, B H, Nix, O, Zechmann, C M and Hamprecht, F A (2009). Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge. IEEE Transaction on Medical Imaging. 28:10 1534-1547PDF icon Technical Report (419.8 KB)
Renard, B Y, Timm, W, Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). Estimating the Confidence of Peptide Identifications without Decoy Databases. Analytical Chemistry. 4314-4318PDF icon Technical Report (619.11 KB)
Hamprecht, F A, Achleitner, U, Krismer, A C, Lindner, K H, Wenzel, V, Strohmenger, H - U, Thiel, W and van Gunsteren, W F (2001). Fibrillation power: An alternative method of ECG spectral analysis for prediction of countershock success in a porcine model of ventricular fibrillation. Resuscitation. 50 287-296
Jähne, B, Brocke, M, Eisele, H, Hader, S, Hamprecht, F A, Happold, W, Raisch, F and Restle, J (2002). Für Anspruchsvolle - Multidimensionale Bildverarbeitung in der Produktion. Qualität und Zuverlässigkeit. 47 1154-1159
Röder, J, Tolosana-Delgado, R and Hamprecht, F A (2011). Gaussian process classification: singly versus doubly stochastic models, and new computational schemes. Stochastic Environmental Research & Risk Assessment. 25 (7) 865-879PDF icon Technical Report (672.68 KB)
Schmähling, J and Hamprecht, F A (2007). Generalizing the Abbott-Firestone curve by two new surface descriptors. Wear. 262 1360-1371PDF icon Technical Report (877.34 KB)
Hamprecht, F A, Scott, W R P and van Gunsteren, W F (1997). Generation of pseudo-native protein structures for threading. Proteins. 28 522-529
Schiegg, M, Hanslovsky, P, Haubold, C, Köthe, U, Hufnagel, L and Hamprecht, F A (2015). Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell. Bioinformatics. 31 948-956. http://bioinformatics.oxfordjournals.org/content/early/2014/11/17/bioinformatics.btu764.full.pdf?keytype=ref&ijkey=mTXWsiFrci7R8tcPDF icon Technical Report (534.29 KB)
Lindner, R, Lou, X, Reinstein, J, Shoeman, R L, Hamprecht, F A and Winkler, A (2014). Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation. Journal of The American Society for Mass Spectrometry. 25 1018-1028PDF icon Technical Report (2.1 MB)
Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). How to Extract the Geometry and Topology from Very Large 3D Segmentations. ArXiv e-prints. http://arxiv.org/abs/1009.6215PDF icon Technical Report (1.44 MB)
Berg, S, Kutra, D, Kroeger, T, Straehle, C N, Kausler, B X, Haubold, C, Schiegg, M, Ales, J, Beier, T, Rudy, M, Eren, K, Cervantes, J I, Xu, B, Beuttenmüller, F, Wolny, A, Zhang, C, Köthe, U, Hamprecht, F A and Kreshuk, A (2019). ilastik: interactive machine learning for (bio)image analysis. Nature Methods
Frank, M and Hamprecht, F A (2011). Image-Based Supervision of a Periodically Working Machine. Pattern Analysis and Applications. 1-10PDF icon Technical Report (466.61 KB)
Meijering, E, Carpenter, A E, Peng, H, Hamprecht, F A and Olivo-Marin, J (2016). Imagining the future of bioimage analysis. Nature Biotechnology. 34 1250-1255PDF icon Technical Report (924.57 KB)
Fiaschi, L, Grosser, K - H, Afonso, B, Zlatic, M and Hamprecht, F A (2013). Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects. ISBI 2013.Proceedings. 656-659PDF icon Technical Report (711.68 KB)
Andres, B, Kappes, J H, Köthe, U and Hamprecht, F A (2010). The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search. ArXiv e-prints. http://arxiv.org/abs/1009.4102PDF icon Technical Report (625.06 KB)
Fiaschi, L, Nair, R, Köthe, U and Hamprecht, F A (2012). Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688PDF icon Technical Report (3.66 MB)
Lou, X and Hamprecht, F A (2012). Learning to Segment Dense Cell Nuclei with Shape Prior. CVPR 2012. Proceedings. 1012-1018PDF icon Technical Report (2.66 MB)
Sommer, C, Fiaschi, L, Hamprecht, F A and Gerlich, D (2012). Learning-based Mitotic Cell Detection in Histopathological Images. ICPR 2012. Proceedings. 2306-2309PDF icon Technical Report (1.96 MB)
Kandemir, M, Hamprecht, F A, Wojek, C and Schmidt, U (2017). Maschinelles Lernen. Patent, Patent Number WO2017032775A1PDF icon Technical Report (317.04 KB)
Staudacher, M, Hamprecht, F A and Görlitz, L (2008). Method for processing an intensity image of a microscope. Patent, Patent Number: WO2008034721A1PDF icon Technical Report (39.81 KB)
Kirchner, M, Steen, J A J, Hamprecht, F A and Steen, H (2010). MGFp: An Open Mascot Generic Format Parser Library Implementation. Journal of Proteome Research. 9 (5) 27622763PDF icon Technical Report (125.18 KB)
Menze, B H, Kelm, B Michael, Weber, M - A, Bachert, P and Hamprecht, F A (2008). Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI. Magnetic Resonance in Medicine. 59 1457-1466PDF icon Technical Report (1.45 MB)
Gee, P J, Hamprecht, F A, Schuler, L D, van Gunsteren, W F, Duchardt, E, Schwalbe, H, Albert, M and Seebach, D (2002). A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution. Helv. Chim. Acta. 85 618-632
Beier, T, Pape, C, Rahaman, N, Prange, T, Berg, S, Bock, D, Cardona, A, Knott, G W, Plaza, S M, Scheffer, L K, Köthe, U, Kreshuk, A and Hamprecht, F A (2017). Multicut brings automated neurite segmentation closer to human performance. Nature Methods. 14 101-102. http://rdcu.be/oVDQ
Jähne, B, Brocke, M, Eisele, H, Hader, S, Hamprecht, F A, Happold, W, Raisch, F and Restle, J (2002). Multidimensionale Bildverarbeitung in der Produktion. QZ. 47 1154--1159. http://www.qz-online.de/qz-zeitschrift/archiv/artikel/multidimensionale-bildverarbeitung-in-der-produktion-fuer-anspruchsvolle-338129.html
Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2PDF icon Technical Report (481.58 KB)
Menze, B H, Petrich, W and Hamprecht, F A (2007). Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy. Analytical and Bioanalytical Chemistry. 387 1801-1807PDF icon Technical Report (283.47 KB)
Trittler, S and Hamprecht, F A (2009). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639PDF icon Technical Report (511.23 KB)
Krasowki, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2017). Neuron Segmentation with High-Level Biological Priors. IEEE Transactions on Medical Imaging. 37
Renard, B Y, Kirchner, M, Steen, H, Steen, J A J and Hamprecht, F A (2008). NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355PDF icon Technical Report (643.89 KB)
Restle, J, Hissmann, M and Hamprecht, F A (2004). Nonparametric Smoothing of Height maps using ``Confidence'' values. Optical Engineering. 43 866-871PDF icon Technical Report (1.07 MB)

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